Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72570 348 / 4e-114 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT3G20840 300 / 2e-93 AP2_ERF PLT1 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) AT4G37750 296 / 3e-92 AP2_ERF DRG, CKC1, ANT DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) AT1G51190 293 / 1e-90 AP2_ERF PLT2 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) AT5G17430 291 / 7e-90 AP2_ERF BBM BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) AT5G57390 285 / 8e-88 AP2_ERF PLT5, EMK, CHO1, AIL5 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) AT5G10510 268 / 7e-81 AP2_ERF PLT3, AIL6 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3) AT5G65510 262 / 5e-80 AP2_ERF PLT7, AIL7 PLETHORA 7, AINTEGUMENTA-like 7 (.1) AT3G54320 189 / 2e-53 AP2_ERF ATWRI1, ASML1, WRI1 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) AT1G79700 169 / 3e-47 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G169500 [exp] 794 / 0 AT1G72570 389 / 2e-131 Integrase-type DNA-binding superfamily protein (.1) Potri.002G114800 [exp] 356 / 1e-113 AT4G37750 459 / 5e-155 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.005G148400 [exp] 336 / 5e-106 AT4G37750 399 / 7e-132 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.014G012200 [exp] 333 / 1e-104 AT4G37750 405 / 8e-134 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.007G007400 [exp] 320 / 8e-100 AT4G37750 412 / 9e-137 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.010G181000 [exp] 298 / 5e-91 AT5G17430 399 / 2e-130 BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) Potri.018G091600 [exp] 293 / 8e-91 AT5G57390 422 / 9e-142 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) Potri.003G205700 [exp] 291 / 3e-90 AT1G51190 635 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.008G076400 [exp] 295 / 4e-90 AT5G17430 405 / 4e-133 BABY BOOM, Integrase-type DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037670 [exp] 321 / 4e-104 AT1G72570 355 / 1e-120 Integrase-type DNA-binding superfamily protein (.1) Lus10031831 [exp] 297 / 2e-93 AT3G20840 580 / 0.0 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) Lus10031260 [exp] 295 / 5e-91 AT1G51190 667 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Lus10007719 [exp] 256 / 7e-77 AT4G37750 429 / 1e-144 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Lus10018655 [exp] 252 / 6e-75 AT4G37750 430 / 9e-145 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Lus10015653 [exp] 224 / 7e-69 AT1G72570 210 / 1e-67 Integrase-type DNA-binding superfamily protein (.1) Lus10012728 [exp] 234 / 9e-69 AT5G10510 495 / 1e-170 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3) Lus10036719 [exp] 208 / 3e-60 AT3G54320 288 / 3e-93 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10037209 [exp] 205 / 5e-59 AT3G54320 286 / 1e-92 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10002657 [exp] 207 / 6e-59 AT5G10510 467 / 5e-160 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G064700.2 pacid=42786010 polypeptide=Potri.003G064700.2.p locus=Potri.003G064700 ID=Potri.003G064700.2.v4.1 annot-version=v4.1 ATGAGTAAATGGTTGGGGTTTTCTCTGACTCCACACTTGAGAATTGATGAAGGGTTTGGTAGAGAAGACCAAGCTCCTGGTTTCTCTGTCATGCCTTTGC GTTCTGATGGATCTCTTTGTGTTTTTGATCCCTTTAGACGTCCATCTAATGGTGCCCCAGATTGGAGATATGAAAACACTATGGATGGAGGCAGTACAAG TGAAGATGGTCCAAAGCTTGAGGATTTCTTGGGGTGTTACTCAAACTCACCTTCTAATGAGACCAAAGTTCATTGTCAGCAAGAAGATCACCAGAGTCAT CAAAACCATGCTAATAGAATCAATGTTGATCTAGCACCAAGCTTCAACACCAACGGAGATGTAAAAACTGGGGAGAATAGTCTCACAAGCCGTTCTTCTT CAATCCAAAGTTACCATTTCAATGACAATCCACAAACCTCAATCCCTAGTCACTGTCTTCAGCACTGTGATTTAAACCATAGCCATAGCCATAACCATAA CCATAACCATGAAAGTGGCATGAACCATGTGCCTTTTGAGAGTGCTAGTTCAGTTTCTGGGTTCAAGTCTTGGCTTAGGCAGACGGCGCCATTTTCTTCT AGTGGGAAGTCTCCAATTGAAGCGAACAATAGCAATTTTCAATCATTATTGCTCACAATGAGTCCTAGTTCTCAGAATGGATTGGCTACTATATCTCCAT TGCAAGTGGTTGATAACCGTAAAAGGCCAGTTGTAAAATCACTTGCTAAAGAACCAGTTTCTCATAAATCTATTGACACATTTGGACAAAGAACTTCACA ATATAGAGGTGTAACAAGGTACTATCTTCCTTTTCTTCTCTTCTTCAAGTCGTGGCAATACCTTCCTTTCAACTTCGCTTCAACATATACATGTGTGTGT GCAATTATCTGTTATATACGTTCTATGATTGTTAGGCATAGATGGACTGGGAGATATGAGGCCCATTTATGGGACAATAGTTGCAGGAAAGAAGGACAAA CGAGGAAAGGAAGGCAAGGTGTGAGAGAAAATAAGCTTTTAATATTTTCTGTATTTCTCTCTAGTATACATACATATGCCGTCTTCTTTCTTTTTCTTCA AAAGAATATACTAACGGTTGCTTTTCTTTTTCACATACTTTTTGGGTATATTCACCTTTCAATGTCACTCAAATCTTATGCAGTTTACCTTGGTGGGTAT GATAAGGAAGAAAAAGCAGCAAGGGCTTATGATTTAGCTGCCTTGAAGTATTGGGGTCCAACAACGCATATTAATTTCCCTTTGAACACTTATGAGAAAG AGCTTGAAGAGATGAAGCACATGACCAGGCAAGAATTTGTAGCCAGTTTGAGAAGGAAAAGTAGTGGGTTTTCAAGAGGAGCTTCTGTGTACAGAGGAGT GACAAGGCATCATCAACATGGAAGATGGCAAGCAAGAATAGGAAGGGTTGCTGGAAACAAGGATTTGTACCTTGGAACATTTAGTACACAAGAAGAAGCT GCAGAGGCCTATGACATTGCTGCAATTAAATTTAGGGGTACCAGTGCTGTTACAAATTTTGGTATAAGAAGGTATGATGTGAAGAGAATTTGCTCAAGCT CCAAACTCATTGCTAGTGACCTAGCTAAGCGTTCAACAAAAGATTCGGCTCCGGTGGCCCTCGAGGATTACAATTCCTGTGCTTCATCAACATCTTCTCA GCCCCACTTTGCCATAGCAAGCAGTGAAGCCTCCCATGAATTGACTGACATGATGTGGAGTGAAAATACAGGGGAACATCAACAGCAACAAAGTGCTAAC AACAATAACAATGGTGTAACTTTGGTGGCTTCAACTAGCAGGAATCCCCCCATTGCTGCTAGTCCAAAATGTTCGGTTGGCTTAGCTAGTGATTTTGGCC TTGGCAGCGAAAGCTATTCTCAGGGCTACTTTCCATTGCAGGGTGGAAAGCATCAAGTCCCTATGTTTGCATTGTGGAATGATTGA
AA sequence Show only first row Show all	>Potri.003G064700.2 pacid=42786010 polypeptide=Potri.003G064700.2.p locus=Potri.003G064700 ID=Potri.003G064700.2.v4.1 annot-version=v4.1 MSKWLGFSLTPHLRIDEGFGREDQAPGFSVMPLRSDGSLCVFDPFRRPSNGAPDWRYENTMDGGSTSEDGPKLEDFLGCYSNSPSNETKVHCQQEDHQSH QNHANRINVDLAPSFNTNGDVKTGENSLTSRSSSIQSYHFNDNPQTSIPSHCLQHCDLNHSHSHNHNHNHESGMNHVPFESASSVSGFKSWLRQTAPFSS SGKSPIEANNSNFQSLLLTMSPSSQNGLATISPLQVVDNRKRPVVKSLAKEPVSHKSIDTFGQRTSQYRGVTRYYLPFLLFFKSWQYLPFNFASTYTCVC AIICYIRSMIVRHRWTGRYEAHLWDNSCRKEGQTRKGRQGVRENKLLIFSVFLSSIHTYAVFFLFLQKNILTVAFLFHILFGYIHLSMSLKSYAVYLGGY DKEEKAARAYDLAALKYWGPTTHINFPLNTYEKELEEMKHMTRQEFVASLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEA AEAYDIAAIKFRGTSAVTNFGIRRYDVKRICSSSKLIASDLAKRSTKDSAPVALEDYNSCASSTSSQPHFAIASSEASHELTDMMWSENTGEHQQQQSAN NNNNGVTLVASTSRNPPIAASPKCSVGLASDFGLGSESYSQGYFPLQGGKHQVPMFALWND

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72570	AP2_ERF		Integrase-type DNA-binding sup...		Potri.003G064700 [exp]	0	1
AT2G46640			unknown protein		Potri.014G102600 [exp]	16.76	0.8669
AT2G42840		PDF1	protodermal factor 1 (.1)		Potri.005G200900 [exp]	19.89	0.8640
AT5G22430			Pollen Ole e 1 allergen and ex...		Potri.009G019300 [exp]	25.03	0.8578
AT1G34245		EPF2	EPIDERMAL PATTERNING FACTOR 2,...		Potri.013G116600 [exp]	30.19	0.8138
AT3G50660		PSC1, CYP90B1, ...	SUPPRESSOR OF NPH4 2, SHADE AV...		Potri.005G124000 [exp]	33.19	0.8205
AT3G22640		PAP85	cupin family protein (.1)		Potri.006G002500 [exp]	44.98	0.8378
AT5G27780			SAUR-like auxin-responsive pro...		Potri.009G141201 [exp]	45.78	0.8423
AT4G01470		ATTIP1.3, GAMMA...	tonoplast intrinsic protein 1;...		Potri.004G216500 [exp]	47.43	0.8277
AT3G02500			unknown protein		Potri.017G112600 [exp]	61.71	0.8366
					Potri.016G139350 [exp]	62.40	0.8178

Compare expression of checked genes

Potri.003G064700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.