Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13960 200 / 6e-61 GRF ATGRF5 growth-regulating factor 5 (.1) AT2G06200 143 / 6e-41 GRF ATGRF6 growth-regulating factor 6 (.1) AT4G37740 146 / 2e-39 GRF ATGRF2 growth-regulating factor 2 (.1) AT2G22840 134 / 5e-35 GRF ATGRF1 growth-regulating factor 1 (.1) AT2G36400 127 / 2e-33 GRF ATGRF3 growth-regulating factor 3 (.1) AT3G52910 122 / 1e-31 GRF ATGRF4 growth-regulating factor 4 (.1) AT4G24150 106 / 2e-25 GRF ATGRF8 growth-regulating factor 8 (.1) AT5G53660 103 / 9e-25 GRF ATGRF7 growth-regulating factor 7 (.1) AT2G45480 78 / 1e-15 GRF ATGRF9 growth-regulating factor 9 (.1) AT1G09060 43 / 0.0003 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G169100 [exp] 468 / 8e-167 AT3G13960 206 / 4e-63 growth-regulating factor 5 (.1) Potri.006G143200 [exp] 251 / 7e-81 AT3G13960 188 / 7e-56 growth-regulating factor 5 (.1) Potri.018G065400 [exp] 246 / 5e-79 AT3G13960 181 / 3e-53 growth-regulating factor 5 (.1) Potri.013G077500 [exp] 166 / 1e-48 AT3G13960 160 / 1e-45 growth-regulating factor 5 (.1) Potri.019G042300 [exp] 159 / 3e-46 AT3G13960 157 / 2e-44 growth-regulating factor 5 (.1) Potri.002G115100 [exp] 150 / 1e-40 AT2G22840 302 / 2e-95 growth-regulating factor 1 (.1) Potri.001G132600 [exp] 143 / 1e-39 AT4G37740 142 / 6e-38 growth-regulating factor 2 (.1) Potri.014G012800 [exp] 147 / 2e-39 AT2G22840 303 / 1e-95 growth-regulating factor 1 (.1) Potri.014G007200 [exp] 142 / 7e-38 AT2G22840 360 / 7e-118 growth-regulating factor 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004455 [exp] 208 / 2e-64 AT3G13960 150 / 8e-42 growth-regulating factor 5 (.1) Lus10033441 [exp] 187 / 9e-56 AT3G13960 191 / 3e-56 growth-regulating factor 5 (.1) Lus10000473 [exp] 182 / 5e-54 AT3G13960 187 / 5e-55 growth-regulating factor 5 (.1) Lus10020352 [exp] 162 / 4e-47 AT3G13960 167 / 2e-48 growth-regulating factor 5 (.1) Lus10037668 [exp] 157 / 4e-46 AT3G13960 156 / 1e-45 growth-regulating factor 5 (.1) Lus10015651 [exp] 154 / 3e-45 AT3G13960 155 / 5e-45 growth-regulating factor 5 (.1) Lus10009533 [exp] 160 / 1e-44 AT3G13960 162 / 7e-45 growth-regulating factor 5 (.1) Lus10014380 [exp] 130 / 6e-36 AT2G36400 181 / 5e-55 growth-regulating factor 3 (.1) Lus10019274 [exp] 135 / 2e-35 AT2G22840 261 / 4e-81 growth-regulating factor 1 (.1) Lus10011558 [exp] 135 / 2e-35 AT2G22840 268 / 2e-83 growth-regulating factor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08879 [poplar] [flax] WRC WRC PF08880 [poplar] [flax] QLQ QLQ
Representative CDS sequence Show only first row Show all	>Potri.003G065000.1 pacid=42785769 polypeptide=Potri.003G065000.1.p locus=Potri.003G065000 ID=Potri.003G065000.1.v4.1 annot-version=v4.1 ATGTTGAATACAACAAGTGCCAGAAATAGCCTTCTTTTTACTGCAACTCAATGGCATGAGCTTGAACACCAAGCTCTCATTTACAAATACATGGTCTCTG GTGTCCCTGTCCCGCCGGAACTCCTCTATTCTGTCAAAAGAAGCTTGGAATCTTCTTTGGCATCAAGACTCTTTCCTCATCAACCTACTGGGTGGGGTTG TTTTCAGGCGGGTGCTGGCAGAAAAGCAGACCCAGAGCCAGGAAGGTGCAGAAGAACGGATGGAAAGAAATGGAGGTGCTCAAAAGAAGCATACCCAGAC TCCAAGTACTGTGAGCGGCACATGCACAGAGGCAAGAATCGTTCAAGAAAGCCTGTGGAACTTGCATCAACTACTACAACAGCAGCGGCAGCAGCAATTC CTTTAACATCAATCAACAGAAACCTCTACAACAACACTGTTTCGCCCTCCAGTTCCTCTTATTCTTTCTCTAACCTCTCTTCATCTATGGAATCTGAAAT TTATGCCCATCAAGATTCTAGCCGCAGCACCTTCCTTTATCCTCATTCTTCATCTTCTGGTCCTCCAGCTGATTCTGGTTTTTCACCTCAAAACAGCACC ACTCATAACCTGTTTTTGGACTGTGGATCTTCTCCTCATGCTGATAAAGAGTATAGGTATTCTCATGGAATAAGGGAGTGTATGGACGGGAGAGCTTTCT TCCCAGATGCTTTAGGGAGTGCAAGAGGCGTACAAGACTCATACAATCAATTGACAATGAGTTCCTACAAAGGTTACTCGCAGTCACAGTTTCAAAGCTT TGCTAATACTTCTAAAGAAGAGCAGCAACAACCAGGGCACCATTGCTTTGTTTTGGGCACTGATATTATCAAGTCATCAGCTACAAGGTCAATCAAGTTG GAGAAAGAACCTGAAACCCAGAAGCCATTGCACCATTTCTTTGGTGAGTGGGAACCGAAGGATGCAGACTCTGGGCTTGATCTTGCATCCAGTTCAAAAC CTGATCACGACACTGATGATTGA
AA sequence Show only first row Show all	>Potri.003G065000.1 pacid=42785769 polypeptide=Potri.003G065000.1.p locus=Potri.003G065000 ID=Potri.003G065000.1.v4.1 annot-version=v4.1 MLNTTSARNSLLFTATQWHELEHQALIYKYMVSGVPVPPELLYSVKRSLESSLASRLFPHQPTGWGCFQAGAGRKADPEPGRCRRTDGKKWRCSKEAYPD SKYCERHMHRGKNRSRKPVELASTTTTAAAAAIPLTSINRNLYNNTVSPSSSSYSFSNLSSSMESEIYAHQDSSRSTFLYPHSSSSGPPADSGFSPQNST THNLFLDCGSSPHADKEYRYSHGIRECMDGRAFFPDALGSARGVQDSYNQLTMSSYKGYSQSQFQSFANTSKEEQQQPGHHCFVLGTDIIKSSATRSIKL EKEPETQKPLHHFFGEWEPKDADSGLDLASSSKPDHDTDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Potri.003G065000 [exp]	0	1
					Potri.006G103800 [exp]	3.31	0.7254
AT5G51800	Trihelix		Protein kinase superfamily pro...		Potri.012G132300 [exp]	3.74	0.8206
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Potri.001G177900 [exp]	50.19	0.7140
AT2G42250		CYP712A1	"cytochrome P450, family 712, ...		Potri.010G227301 [exp]	149.38	0.6513
AT3G51070			S-adenosyl-L-methionine-depend...		Potri.005G118100 [exp]	166.77	0.6326
AT2G27285			Coiled-coil domain-containing ...		Potri.004G201300 [exp]	277.88	0.6143
AT4G00680		ADF8	actin depolymerizing factor 8 ...		Potri.003G125500 [exp]	285.22	0.6046	ADF.8,ADF3

Compare expression of checked genes

Potri.003G065000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.