Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54150 341 / 3e-115 E3 Ubiquitin ligase family protein (.1) AT1G59560 74 / 2e-14 ZCF61, DAL2 DIAP1-like protein 2, E3 Ubiquitin ligase family protein (.1) AT4G24204 63 / 1e-11 RING/U-box superfamily protein (.1.2.3) AT1G63900 65 / 2e-11 DAL1 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) AT5G19080 51 / 6e-07 RING/U-box superfamily protein (.1) AT2G38185 51 / 8e-07 RING/U-box superfamily protein (.1.2.3.4) AT2G38195 49 / 4e-06 RING/U-box superfamily protein (.1.2) AT5G03200 48 / 6e-06 RING/U-box superfamily protein (.1) AT3G06140 47 / 9e-06 RING/U-box superfamily protein (.1) AT5G23110 48 / 1e-05 Zinc finger, C3HC4 type (RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G168700 [exp] 607 / 0 AT1G54150 301 / 1e-99 E3 Ubiquitin ligase family protein (.1) Potri.014G138000 [exp] 74 / 2e-14 AT1G63900 548 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Potri.014G020900 [exp] 58 / 4e-09 AT5G01450 116 / 9e-29 RING/U-box superfamily protein (.1) Potri.007G050500 [exp] 52 / 1e-07 AT4G24204 81 / 4e-20 RING/U-box superfamily protein (.1.2.3) Potri.001G251900 [exp] 53 / 2e-07 AT5G01450 327 / 7e-108 RING/U-box superfamily protein (.1) Potri.005G036400 [exp] 49 / 3e-06 AT3G06140 296 / 2e-97 RING/U-box superfamily protein (.1) Potri.016G116300 [exp] 49 / 6e-06 AT5G01450 348 / 3e-116 RING/U-box superfamily protein (.1) Potri.006G128700 [exp] 48 / 6e-06 AT3G09770 380 / 4e-131 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Potri.008G202700 [exp] 48 / 6e-06 AT5G19080 340 / 4e-115 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000533 [exp] 421 / 4e-147 AT1G54150 349 / 5e-119 E3 Ubiquitin ligase family protein (.1) Lus10027994 [exp] 74 / 3e-14 AT1G63900 532 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Lus10008163 [exp] 71 / 2e-13 AT1G63900 533 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Lus10010392 [exp] 54 / 4e-08 AT4G24204 86 / 7e-22 RING/U-box superfamily protein (.1.2.3) Lus10034030 [exp] 52 / 5e-07 AT5G19080 344 / 1e-116 RING/U-box superfamily protein (.1) Lus10002487 [exp] 52 / 6e-07 AT5G01450 347 / 5e-115 RING/U-box superfamily protein (.1) Lus10004419 [exp] 51 / 1e-06 AT3G06140 350 / 4e-119 RING/U-box superfamily protein (.1) Lus10041300 [exp] 48 / 8e-06 AT3G09770 352 / 3e-120 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10004813 [exp] 48 / 8e-06 AT2G38185 309 / 2e-100 RING/U-box superfamily protein (.1.2.3.4) Lus10037412 [exp] 48 / 9e-06 AT3G09770 351 / 6e-120 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12483 [poplar] [flax] GIDE E3 Ubiquitin ligase CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.003G065500.1 pacid=42786422 polypeptide=Potri.003G065500.1.p locus=Potri.003G065500 ID=Potri.003G065500.1.v4.1 annot-version=v4.1 ATGGCATCACGTGCCCATGAGCAAGCACTGGCCGCCATGCTATCCCATCTTGCTCTCTCCTTCGACGGAGCAATTCTTGGCGCGGCTCTTGCCTACGCCG CTGTACGTTCATTTCTCAATTTTACAGCAAACTCTAAATCCCTTGCCAAAATCCGCAAGGCACCCACTCTCTCCGTCTCCGACCTCCGCTCTCTCCTTCA AAATCATGATCAAGACCATCAGGACCAGGAGCAGAAGCTCGTGATTGTCAGAGGACAAGTAGAGGCTAAATCAGCCGTTGATGGGTCCGGGAAGAAGAGC TCGAGGGACTCTAATGTTTTGCTTTCTCATGAGTCTGGTGACAAGGCTGTTATTCTACAAAGAACTCAAACTTGTATATACAACGAATGGAAGGGCTTTT TTGGATGGACTTCCGACTTACGATCTATCTTTGGAAGATCTTTGAAAGAACAAGAAACAACCTTTTTAAGAACGGTTCCTTTTACGCTTGTTGAAGGTGG TCAATGGCCACAATCTGATTATGTTATCGTGAACATGGATGGATCAAGTCACCCCCTACCTCTTACGATGGTTTATCATCAGTTGCAACCCATTGTTGCT TCTCGTTATACATTCATTCAGGCGCTTTTTGGTCATGAATACCCTGTTGGGGTGCTTCATGAGGAGAAAATCCTTCCATTAGGGAAGTGTATCAGTGCTG TTGGCATATGCAATTCTAAAGATGGAATTCCAGAGATAAAATCTTGCAAAGAACTTCCCTATTTTCTGGCTGACATGACCAAAGATGAAATGGTGGCAGA TCTTGCCTTCAAGGCGAAAATACTGCTATGGAGTGGTATTGTTCTTGGTTCACTTTCTATTGGAGTCCTTGGCTTTGCTGTCATGAGGAACTGGAATAAA TGGAAAGCGTGGAGGCAAAGACGCTCTCAGCAGCCAATCCACACTACCAGTGATGAAGATGTCTCTCAAATTGATGACAACGAGGATGCTGGAGATGTGC CTGAGGGGCAGTTGTGTGTGATCTGCTTGATGAGGAGAAGACGGGCTGCCTTCATTCCCTGTGGGCATCTTGCATGTTGTCATACCTGTGCCGTATCAGT TGAAAGTGAGGTATCACCCAAATGCCCTCTCTGTAGGCAGGCAGTTCGAAATTCTATCAGGATTTTTGAATGTTGA
AA sequence Show only first row Show all	>Potri.003G065500.1 pacid=42786422 polypeptide=Potri.003G065500.1.p locus=Potri.003G065500 ID=Potri.003G065500.1.v4.1 annot-version=v4.1 MASRAHEQALAAMLSHLALSFDGAILGAALAYAAVRSFLNFTANSKSLAKIRKAPTLSVSDLRSLLQNHDQDHQDQEQKLVIVRGQVEAKSAVDGSGKKS SRDSNVLLSHESGDKAVILQRTQTCIYNEWKGFFGWTSDLRSIFGRSLKEQETTFLRTVPFTLVEGGQWPQSDYVIVNMDGSSHPLPLTMVYHQLQPIVA SRYTFIQALFGHEYPVGVLHEEKILPLGKCISAVGICNSKDGIPEIKSCKELPYFLADMTKDEMVADLAFKAKILLWSGIVLGSLSIGVLGFAVMRNWNK WKAWRQRRSQQPIHTTSDEDVSQIDDNEDAGDVPEGQLCVICLMRRRRAAFIPCGHLACCHTCAVSVESEVSPKCPLCRQAVRNSIRIFEC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54150			E3 Ubiquitin ligase family pro...		Potri.003G065500 [exp]	0	1
AT4G08455			BTB/POZ domain-containing prot...		Potri.002G077000 [exp]	1.73	0.8591
AT4G26980			RNI-like superfamily protein (...		Potri.011G090700 [exp]	2.23	0.8876
AT5G17550		AtPEX19-2, PEX1...	peroxin 19-2 (.1)		Potri.003G077000 [exp]	6.16	0.8052
AT5G15080			Protein kinase superfamily pro...		Potri.010G033800 [exp]	6.16	0.8669
AT1G01350	C3HZnF		Zinc finger (CCCH-type/C3HC4-t...		Potri.014G097300 [exp]	7.48	0.8393
AT1G08580			unknown protein		Potri.013G091200 [exp]	7.74	0.8188
AT2G02360		ATPP2-B10	phloem protein 2-B10 (.1)		Potri.001G050100 [exp]	8.06	0.8278
AT4G39150			DNAJ heat shock N-terminal dom...		Potri.004G158300 [exp]	9.16	0.8293
AT3G18650	MADS	AGL103	AGAMOUS-like 103 (.1)		Potri.010G181300 [exp]	9.48	0.8477
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Potri.006G065100 [exp]	11.00	0.8306

Compare expression of checked genes

Potri.003G065500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.