Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PSD.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72560 1451 / 0 PSD PAUSED, ARM repeat superfamily protein (.1.2.3) AT5G17020 51 / 5e-06 HIT2, ATXPO1, ATCRM1, XPO1A HEAT-INTOLERANT 2, ARABIDOPSIS THALIANA EXPORTIN 1, exportin 1A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G168100 [exp] 1735 / 0 AT1G72560 1420 / 0.0 PAUSED, ARM repeat superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037671 [exp] 1509 / 0 AT1G72560 1433 / 0.0 PAUSED, ARM repeat superfamily protein (.1.2.3) Lus10015655 [exp] 870 / 0 AT1G72560 838 / 0.0 PAUSED, ARM repeat superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF08389 [poplar] [flax] Xpo1 Exportin 1-like protein
Representative CDS sequence Show only first row Show all	>Potri.003G066200.1 pacid=42785613 polypeptide=Potri.003G066200.1.p locus=Potri.003G066200 ID=Potri.003G066200.1.v4.1 annot-version=v4.1 ATGGATGATGTTGAAAAAGCGATACTTATAAGTTTTGAAGAATCGGGCGCTATAGATTCAGCTCTAAAATCACAAGCACTCTCTTTCTGTCAGCAAATTA AGGAAACCCCAACTGTATGCCGTATTTGCATTGAGAAGTTATGTTTTTGCAACCTCGTTCAGGTTCAATTTTGGTGTTTGCAGACTTTACATGAGGTTAT TAGGGTTAAATATGCTATGTTGAGCTTAGAAGAGAAGGATTTCATTAGGAAATCTGTGTTTTCTATGTGTTGTTTTGAGGTTATTGATGATAAGAATAAC AATGCTGTTAGGATTTTAGAGGGTGCCCCTGCATTTATAAAGAATAAGCTTGCGCAGGTTTTTGTCACTTTGGTTTATTTTGATTACCCTTTAATTTGGT CTTCGGTGTTTGTTGATTTTTTGCCTCATTTGAGGAAAGGGGCGGTGGTTATTGATATGTTCTGTAGGATTTTGAATGCTTTGGATGATGAATTGATTAG TTTAGATTACCCACGGACACCCGAGGAGATGGGGGTTGCGGGGCGGGTTAAGGATGCTATAAGGCAGCAATGCATAGCGCAGATAGTGAATGTTTGGTAT GAAATTGTTTCTATGTATCGGAATTCTGATCTGGACCTTTGCTCTAGTGTGTTAGAATCAATGAGGAGGTATATTTCATGGATTGATATTGGGTTGATTG TGAATGATGCATTCATTCCATTATTATTTCAGCTGATTTTAGTTAGTGGGGGATCTGAGCAACTTCAGGGTGCTGCCGCGGGGTGTGTTTTGGCAGTGGT TTCCAAGCGGATGGATCATCAATCAAAGTTAGCAATATTGCAGAATCTTCAGATAAATAGGGTTTTTGGGTTGGTAACTGGAGATATTGACTCAGAGTTG GTGTCAAAAGTAGCTGCATTGATTACAGGGTATGCCGTTGAGGTTTTGGAGTGTTATAAACGGGTGAATACGGAAGATGCTAAGGGTGTTTCTCTGGAGC TTTTGAATGAAGTTTTGCCATCTGTTTTTTATGTAATGCAGAACTGTGAGGTGGACAACACATTTAGTATTGTGCAGTTTCTCTCTTGTTATGTTACCAC TATGAAGAGCCTTTCTCCATTGAGAGAGAAACAACTGCATCATGTGGGGAAGATGTTGGAAGTTCTTTGTGCACAAATTCGTTACGATCCTATCTACCGT GAAAATCTTGATATGCTGGATAAGATTGGGAGAGAGGAGGAAGAAAAGATGGTGGAATTTAGAAAGGACCTATTTGTGTTGTTACGTAGCGTGGCTCGCG TGGCACCGGATGTTACTCAAATGTTTATCAGAAACTCTTTAGTCAGTTGTATCTCATCTGTGTCAGAAAGAAATGTTGAAGAGGTAGAAGCTTCTCTTTC TCTTTTGTATGCACTTGGAGAGTCATTAAGTGATGAAGCCATAAAAACTGGAAGCGGACTGTTGGGCGAATTGGTGCCAACCCTCATTTCGACTAGGTTT CAGTGCCATTTTAATAGGTTAGTTGCACTTGTGTATTTGGAGACTATAACTAGATATATCAAGTTTGTCCAGGAGCATACCGAGTATGTCCCCATGGTTT TGACTGCATTTCTGGATGAGAGAGGAATTCACCACCCAAACTTCCATGTGAGGCGTAGAGCTAGTTATCTGTTCATGAGGGTTGTGAAATTGCTAAAAGC AAAGCTTGTTCCTTTCATAGAGTCAATTTTGCAGAGCCTCCAAGATACAGTAACTCGGTTTACATCTCTGAATCATACATCAAATGATTTTTTAGGATCT GAAGATGGTAGCCACATCTTTGAGGCAATTGGTCTCTTAATTGGGATGGAAGATGTACCATCTGAAAAGCAATCTGATTATCTATCTTCACTGCTCACCC CTCTTTGCCATCAGGTGGAAACATTACTCATAAATGCCAATGCACTGAGTCCGGAAGAATCTCCAGCGAAAATTGCTAATATTCAGCAAGTAATCATGGC AATTAATGCACTCAGCAAGGGTTTTAGTGAGCGTCTGGTAACCGCGAGTCGCCCTGCAATAGGTGTCATGTTTAAGAAGACATTGGATGTTCTCCTCCAA ATACTTGTTGTTTTTCCAAAGATAGAGCCTTTACGGAACAAGGTTACGTCCTTCATTCATCGTATGGTAGATACTTTAGGTGCATCTGTATTTCCATTCC TTCCCAAGGCATTGGGACAATTGCTTGCAGAAAGTGAGCCAAAGGAAATGGTTGGTTTTCTTGTTCTACTCAATCAGCTTATATGCAAATTCAGCACCTC GGTGCATGACATAGTGGAGGAAGTTTTTCCTGCTATTGCTGGTAGAATATTTAGTCTTATCCCAACTGAACCATTTCCTTTAGGACATGGAACCAATTCT GAGGAAATTCGTGAATTACAAGAACTCCAAAAAACATTGTACACATTTCTTCATGTGATAACTACACATGATCTATCTTCAGTCTTCCTTTCACCTAAGA GTAGAGACTACTTGGATAAGATGATGCAGTTGCTACTTCAGTCAGCTTGCCATCACGAGGATATTCTTGTGAGGAAGGCATGTGTGCAGATATTCATTAG ATTAATTAAAGACTGGTGTACAAGACCTGATGTTGAAGCAAAGGTACCTGGTTTCCGAAGCTTTATAATCGATGGCTTTGCTAAGAACTGTTGTTTTTAC AGCGCACTTGACAAATCCTTTGAGTTTCATGATGCAAACACTCTCATTCTGTTTGGAGAAATTGTACTTGCTCAGAAGGTTATGTACGAGAAGTTTGGTG ATGGTTTTCTTATTCATTTTGTAACAAATTGCTTTACTACTGCACATTGCCCTCAAGATGTAGCTGCACAATATTGCCAGAAGTTGCAGGGTAATGATAT GAAGGCATTGAGATCATTCTACCAGTCAGTCATTGAGAATTTACGACTGCGACAGCAACAGAACGGAAACCTTGTTTTCAGATAG
AA sequence Show only first row Show all	>Potri.003G066200.1 pacid=42785613 polypeptide=Potri.003G066200.1.p locus=Potri.003G066200 ID=Potri.003G066200.1.v4.1 annot-version=v4.1 MDDVEKAILISFEESGAIDSALKSQALSFCQQIKETPTVCRICIEKLCFCNLVQVQFWCLQTLHEVIRVKYAMLSLEEKDFIRKSVFSMCCFEVIDDKNN NAVRILEGAPAFIKNKLAQVFVTLVYFDYPLIWSSVFVDFLPHLRKGAVVIDMFCRILNALDDELISLDYPRTPEEMGVAGRVKDAIRQQCIAQIVNVWY EIVSMYRNSDLDLCSSVLESMRRYISWIDIGLIVNDAFIPLLFQLILVSGGSEQLQGAAAGCVLAVVSKRMDHQSKLAILQNLQINRVFGLVTGDIDSEL VSKVAALITGYAVEVLECYKRVNTEDAKGVSLELLNEVLPSVFYVMQNCEVDNTFSIVQFLSCYVTTMKSLSPLREKQLHHVGKMLEVLCAQIRYDPIYR ENLDMLDKIGREEEEKMVEFRKDLFVLLRSVARVAPDVTQMFIRNSLVSCISSVSERNVEEVEASLSLLYALGESLSDEAIKTGSGLLGELVPTLISTRF QCHFNRLVALVYLETITRYIKFVQEHTEYVPMVLTAFLDERGIHHPNFHVRRRASYLFMRVVKLLKAKLVPFIESILQSLQDTVTRFTSLNHTSNDFLGS EDGSHIFEAIGLLIGMEDVPSEKQSDYLSSLLTPLCHQVETLLINANALSPEESPAKIANIQQVIMAINALSKGFSERLVTASRPAIGVMFKKTLDVLLQ ILVVFPKIEPLRNKVTSFIHRMVDTLGASVFPFLPKALGQLLAESEPKEMVGFLVLLNQLICKFSTSVHDIVEEVFPAIAGRIFSLIPTEPFPLGHGTNS EEIRELQELQKTLYTFLHVITTHDLSSVFLSPKSRDYLDKMMQLLLQSACHHEDILVRKACVQIFIRLIKDWCTRPDVEAKVPGFRSFIIDGFAKNCCFY SALDKSFEFHDANTLILFGEIVLAQKVMYEKFGDGFLIHFVTNCFTTAHCPQDVAAQYCQKLQGNDMKALRSFYQSVIENLRLRQQQNGNLVFR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72560		PSD	PAUSED, ARM repeat superfamily...		Potri.003G066200 [exp]	0	1	Pt-PSD.2
AT1G67960		POD1	POLLEN DEFECTIVE IN GUIDANCE 1...		Potri.010G103400 [exp]	4.12	0.7711
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Potri.001G350200 [exp]	8.48	0.8099
AT4G19610			nucleotide binding;nucleic aci...		Potri.003G149600 [exp]	12.48	0.7853
AT4G02560	HD	LD	luminidependens, Homeodomain-l...		Potri.014G132800 [exp]	12.84	0.8141	Pt-LD.2
AT4G04790			Tetratricopeptide repeat (TPR)...		Potri.001G417400 [exp]	13.85	0.7152
AT4G23540			ARM repeat superfamily protein...		Potri.006G050000 [exp]	18.97	0.7891
AT4G39160	MYB		Homeodomain-like superfamily p...		Potri.010G019600 [exp]	19.39	0.8041
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Potri.005G092700 [exp]	20.54	0.8104
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Potri.005G048900 [exp]	23.23	0.7587	XRN4.1
AT4G19440			Tetratricopeptide repeat (TPR)...		Potri.003G105700 [exp]	25.98	0.7900

Compare expression of checked genes

Potri.003G066200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.