Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05940 540 / 0 RIPK RPM1-induced protein kinase, Protein kinase superfamily protein (.1) AT1G72540 508 / 4e-179 Protein kinase superfamily protein (.1) AT2G26290 481 / 6e-169 ARSK1 root-specific kinase 1 (.1) AT5G35580 477 / 4e-166 Protein kinase superfamily protein (.1) AT5G01020 434 / 2e-150 Protein kinase superfamily protein (.1) AT1G61590 415 / 6e-143 Protein kinase superfamily protein (.1) AT5G56460 386 / 9e-132 Protein kinase superfamily protein (.1) AT5G15080 384 / 9e-130 Protein kinase superfamily protein (.1) AT3G28690 375 / 8e-128 Protein kinase superfamily protein (.1.2.3) AT2G07180 377 / 1e-127 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G168000 [exp] 762 / 0 AT2G05940 519 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.006G141500 [exp] 578 / 0 AT2G05940 638 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.006G219300 [exp] 549 / 0 AT2G05940 536 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.016G143200 [exp] 435 / 1e-150 AT5G01020 655 / 0.0 Protein kinase superfamily protein (.1) Potri.006G113600 [exp] 434 / 3e-150 AT5G01020 664 / 0.0 Protein kinase superfamily protein (.1) Potri.001G128500 [exp] 429 / 2e-148 AT1G61590 622 / 0.0 Protein kinase superfamily protein (.1) Potri.003G105400 [exp] 424 / 2e-146 AT1G61590 597 / 0.0 Protein kinase superfamily protein (.1) Potri.001G002300 [exp] 402 / 1e-138 AT5G56460 608 / 0.0 Protein kinase superfamily protein (.1) Potri.003G222600 [exp] 400 / 8e-138 AT5G56460 585 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013148 [exp] 578 / 0 AT2G05940 484 / 3e-169 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10008110 [exp] 573 / 0 AT2G05940 486 / 2e-170 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10034897 [exp] 515 / 0 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10033429 [exp] 509 / 1e-178 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10011930 [exp] 490 / 1e-171 AT2G05940 530 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10027638 [exp] 489 / 3e-171 AT2G05940 529 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10036762 [exp] 424 / 1e-145 AT5G01020 672 / 0.0 Protein kinase superfamily protein (.1) Lus10033294 [exp] 415 / 1e-143 AT1G61590 552 / 0.0 Protein kinase superfamily protein (.1) Lus10034757 [exp] 416 / 6e-143 AT1G61590 624 / 0.0 Protein kinase superfamily protein (.1) Lus10030668 [exp] 389 / 2e-131 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.003G066300.1 pacid=42786199 polypeptide=Potri.003G066300.1.p locus=Potri.003G066300 ID=Potri.003G066300.1.v4.1 annot-version=v4.1 ATGGTTCTCAAAAAGTTCACTTGGAAATCAATAGTCCTAGGATGTCTCAGAGGTGAGAGATCACGCCCAGAGCCAAAACAAACATGTTCCCAGAGGCTAT CCCTTTCAGACTTGAGCAATCCTGTTTCACCAATTTCATTCAGCGACCTGTCCATTTCTATTTTTAACCTTCATGTTTTCACACTGAAAGAGCTACAGAC AGTAACGAATGAGTTCTCAAAGAGCAATTATCTTGGGGAAGGTGGATTTGGGGCTGTGTACAAAGGATTCATTGACGACAAGCTTAGGCCAGGATTAAAG GCTCAGCCTGTGGCTGTCAAGGTGTTGGATTTGGATGGCTCTCAAGGACATCGAGAGTGGCTGGCCGAGATCATCTTTCTTGGGCAATTAAAGCACCGCC ATCTTGTGAACCTGATCGGTTACTGCGGCGAGGAAGAGCATCGGCTTCTGGTGTATGAATACATAGAGCGAGGCAGCCTAGAGAACAAACTATTCAACAG ATATTCTGCAGCCTTGCCTTGGTTAACAAGACTAAAAATTGCAGTTGGAACGGCGAAAGGCCTTGCCTTCCTCCACGAAGAAGAAAAGCCAGTCATATAT CGTGATTTTAAGGCTTCAAATGTCTTATTAGAATCGGATTATAATGCAAAGCTTTCAGATTTTGGCCTGGCAATGGATGGTCCAGAAGGAGATGATACCC ACGTTACAACGCCTGTTATGGGCACTGAAGGCTATGCCGCTCCGGAATACATAATGACAGGCCATTTGACAACCATGAGCGATGTGTTCAGCTTCGGAGT GGTACTTTTAGAGCTTATAACTGGTCGACGATCTGTGGACAAGAACCGTCCAAACAGAGAGCAGAACCTAGTGAAGTGGGCAAGACCTCAATTGAAGGAT CCCCGCAAGCTAGATCAAATAATGGACCCGAGACTTGAAGGCCAGTATTCGTCCGAGGGTGCGAGAAAGGCAGCAGCATTGGCTTACCAGTGTTTGAGTC ACCATCCCAAGTCTAGACCAACTATGAGAACTGTTGTCAAGACCTTGGAGCCTCTACTTGCCTTAACTGACATTCCCATTGGACCCTTTGTGTATATTGT TCCAAATGAAGGCAAAATCCTAAGTGATCTAGAAAAGAAGGGAAAAGAAAGTACAGATGAATGTGATGAGATTAGAAACGGTAATACATGCGAAGGAAAG CAGGTGGAGATTAAAGAGAAGGGCTGCGATCGCCACCGCAAAGGCCATCGGCACAGACGGAGGACTAAGTCACTGAGGTCTAGAGCTGTCTATTCTGATA CAACTTTGTATAAAACCATAGGAACTGGTTTGTACTCTCCCAGAAACTAG
AA sequence Show only first row Show all	>Potri.003G066300.1 pacid=42786199 polypeptide=Potri.003G066300.1.p locus=Potri.003G066300 ID=Potri.003G066300.1.v4.1 annot-version=v4.1 MVLKKFTWKSIVLGCLRGERSRPEPKQTCSQRLSLSDLSNPVSPISFSDLSISIFNLHVFTLKELQTVTNEFSKSNYLGEGGFGAVYKGFIDDKLRPGLK AQPVAVKVLDLDGSQGHREWLAEIIFLGQLKHRHLVNLIGYCGEEEHRLLVYEYIERGSLENKLFNRYSAALPWLTRLKIAVGTAKGLAFLHEEEKPVIY RDFKASNVLLESDYNAKLSDFGLAMDGPEGDDTHVTTPVMGTEGYAAPEYIMTGHLTTMSDVFSFGVVLLELITGRRSVDKNRPNREQNLVKWARPQLKD PRKLDQIMDPRLEGQYSSEGARKAAALAYQCLSHHPKSRPTMRTVVKTLEPLLALTDIPIGPFVYIVPNEGKILSDLEKKGKESTDECDEIRNGNTCEGK QVEIKEKGCDRHRKGHRHRRRTKSLRSRAVYSDTTLYKTIGTGLYSPRN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Potri.003G066300 [exp]	0	1
AT2G41760			unknown protein		Potri.006G051500 [exp]	2.00	0.9470
AT4G30420			nodulin MtN21 /EamA-like trans...		Potri.006G177600 [exp]	2.82	0.9176
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Potri.001G226904 [exp]	3.16	0.9040
AT2G21940		ATSK1	shikimate kinase 1 (.1.2.3.4.5...		Potri.005G084600 [exp]	6.63	0.8762	SK2
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.008G180400 [exp]	7.54	0.8887
AT4G15620			Uncharacterised protein family...		Potri.001G323700 [exp]	8.12	0.8997
AT4G31860			Protein phosphatase 2C family ...		Potri.018G017800 [exp]	8.30	0.8710
AT5G11890		EMB3135	EMBRYO DEFECTIVE 3135, unknown...		Potri.018G052500 [exp]	8.48	0.9125
					Potri.006G056101 [exp]	9.74	0.9125
AT5G13420			Aldolase-type TIM barrel famil...		Potri.003G161900 [exp]	9.79	0.8980

Compare expression of checked genes

Potri.003G066300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.