Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07990 385 / 9e-129 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT3G48280 345 / 3e-113 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT1G01280 345 / 3e-113 CYP703A2 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1) AT3G48310 344 / 4e-113 CYP71A22 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) AT4G36220 343 / 4e-112 CYP84A1, FAH1, F5H1 ferulic acid 5-hydroxylase 1 (.1) AT1G13080 342 / 5e-112 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT3G26330 342 / 7e-112 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT2G45560 340 / 4e-111 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT5G06900 338 / 1e-110 CYP93D1 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) AT5G57260 338 / 1e-110 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G167900 [exp] 934 / 0 AT5G07990 369 / 1e-122 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.003G066600 [exp] 704 / 0 AT5G07990 382 / 1e-127 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G040200 [exp] 703 / 0 AT5G07990 389 / 2e-130 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.003G066800 [exp] 702 / 0 AT5G07990 379 / 2e-126 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G167800 [exp] 657 / 0 AT5G07990 353 / 2e-116 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.018G051300 [exp] 635 / 0 AT5G07990 379 / 9e-127 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.006G141400 [exp] 632 / 0 AT5G07990 373 / 6e-124 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G084200 [exp] 409 / 3e-138 AT3G26300 385 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G085000 [exp] 410 / 9e-138 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013150 [exp] 748 / 0 AT5G07990 403 / 4e-136 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10008112 [exp] 736 / 0 AT5G07990 407 / 2e-137 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10017742 [exp] 589 / 0 AT5G07990 400 / 9e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10035502 [exp] 389 / 6e-130 AT5G06900 533 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10021620 [exp] 383 / 1e-127 AT5G07990 657 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10017961 [exp] 380 / 1e-126 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10021158 [exp] 380 / 2e-126 AT5G07990 706 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10019457 [exp] 375 / 1e-124 AT3G48280 467 / 2e-161 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10043308 [exp] 364 / 2e-120 AT3G48280 463 / 5e-160 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10041951 [exp] 356 / 2e-117 AT3G48280 519 / 0.0 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.003G066400.1 pacid=42787212 polypeptide=Potri.003G066400.1.p locus=Potri.003G066400 ID=Potri.003G066400.1.v4.1 annot-version=v4.1 ATGCTATTTTTATCACCGCAAATCTTTCTTTACCTCCAACACAACCCACCAACAAGCAAAATGGAGACTCCTACTTGGATGTCCTATGCATTTGCATGGC TTGCCACTGTATCCCTTATCCTGCTAGCCAGCCGTCTCCGCCGCCGCAAGCTCAACCCACCACCAGGCCCAAAATCCTGGCCGATAATTGGAAACCTCAA TCTCATAGGCGAACTCCCCCACCGTTCCCTCCATGCCCTCTCCCAAAAATATGGCCCCCTCATGCAAGTCAAATTTGGATCATTCCCAGTTGTTGTTGGC TCTTCTGTTGAAATGGCAAAAACCATCCTCAAAACCCACGATGTTATCTTCTCTGGCCGCCCCAAAACAGCTGCAGGCAAATACACCACCTATAATTACT CGGATATTACATGGTCTCCATACGGACCTTATTGGCGTCAAGCACGTAAAATGTGCTTAATGGAACTTTTTAGTGCTAAGCGCCTTGAGTCGTACGAGTA CATTCGTGTAGAGGAGTTGAGAGCACTCCTTAAAACTCTTAACAAATCAAGTGGCAGGCCTATTAATCTGAAAGATCACCTTGCAGATGTGAGTCTTAAC GTAATTAGTCGTATGGTGTTAGGGAAGAAATACACAGTCAAGAGTTCCGAGAATGAGAAGGAGATAGTAACACCAGAGGAATTCAAAGAAATGCTTGATG AGTTGTTCTTGCTTAATGGGGTGTTGGATATCGGTGACTCGATCCCTTGGATTGCTTTCTTAGATTTGCAAGGTTACATTAAGAGAATGAAGACTTTATC CAAGAAGTTTGACAAGTTTATGGAGCATGTGTTGGATGAACACGAAGCTAGGAGAAAGGAAGACAAGAACTGGGAGCCCAAGGATATGGTTGATGTCCTT TTGCAGCTTGCTTCTGATCCTAATCTTGAGATCAAGCTTGAAAGACATGGAGTGAAGGCATTTTCACAGGACTTGATTGCCGGTGGAACTGAAAGCTCCG CAGTGACCGTGGAATGGGGAATTTCAGAGATCTTGAGAAAGCCAGAAGTTTTTGAGAAAGCAACAGAAGAGCTGGATAGGGTAATTGGAAGAGAAAGATG GGTGGAAGAGAAAGACATGGTTAATTTGCCATACATCTATGCCATTGCTAAGGAGGTTATGCGCTTGCACCCTGTGGCACCAATGCTTGTGCCTAGAGCA GCACGTGAAGATATCAACATCAATGGTTACGACATTAAAAAAGGCTCCCGAGTACTTGTTAATGTGTGGACCATAGGGAGAGATCCCAAAGTATGGGACA AACCTGATGAATTTTTCCCAGAGAGATTCATTGGTAATTCTATTGATGTTAGAGGTCATGATTATGAGCTATTGCCATTTGGAGCTGGAAGAAGGATGTG TCCTGGATATCCTTTAGGACTAAAGGTAATTCAAGCAACTTTGTCAAATCTTCTTCATGGATTTAAATGGAGATTGCCTGATGGCCAGAAGAAGGATGAC TTGAACATGGACGAAATTTTTGGGCTTTCTACACCCAAAAAATACCCTCTTGTTGCTGTTGCCGAACCTCGTCTTCCAGCTCATGTTTACCCCAAGTGA
AA sequence Show only first row Show all	>Potri.003G066400.1 pacid=42787212 polypeptide=Potri.003G066400.1.p locus=Potri.003G066400 ID=Potri.003G066400.1.v4.1 annot-version=v4.1 MLFLSPQIFLYLQHNPPTSKMETPTWMSYAFAWLATVSLILLASRLRRRKLNPPPGPKSWPIIGNLNLIGELPHRSLHALSQKYGPLMQVKFGSFPVVVG SSVEMAKTILKTHDVIFSGRPKTAAGKYTTYNYSDITWSPYGPYWRQARKMCLMELFSAKRLESYEYIRVEELRALLKTLNKSSGRPINLKDHLADVSLN VISRMVLGKKYTVKSSENEKEIVTPEEFKEMLDELFLLNGVLDIGDSIPWIAFLDLQGYIKRMKTLSKKFDKFMEHVLDEHEARRKEDKNWEPKDMVDVL LQLASDPNLEIKLERHGVKAFSQDLIAGGTESSAVTVEWGISEILRKPEVFEKATEELDRVIGRERWVEEKDMVNLPYIYAIAKEVMRLHPVAPMLVPRA AREDININGYDIKKGSRVLVNVWTIGRDPKVWDKPDEFFPERFIGNSIDVRGHDYELLPFGAGRRMCPGYPLGLKVIQATLSNLLHGFKWRLPDGQKKDD LNMDEIFGLSTPKKYPLVAVAEPRLPAHVYPK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.003G066400 [exp]	0	1
AT1G65880		BZO1	benzoyloxyglucosinolate 1 (.1)		Potri.004G082000 [exp]	1.00	0.9917
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.003G066800 [exp]	2.44	0.9866
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Potri.016G014500 [exp]	2.82	0.9847
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.002G120700 [exp]	3.00	0.9862
AT5G41315	bHLH	MYC6.2, GL3	GLABROUS 3, GLABRA 3, basic he...		Potri.014G083900 [exp]	4.69	0.9494	TAN1.1
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.003G066600 [exp]	5.00	0.9827
AT1G49660		ATCXE5	carboxyesterase 5 (.1)		Potri.009G103800 [exp]	6.63	0.9634
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.014G019700 [exp]	7.93	0.9695
AT1G24420			HXXXD-type acyl-transferase fa...		Potri.006G034132 [exp]	8.00	0.9722
AT1G62660			Glycosyl hydrolases family 32 ...		Potri.015G127100 [exp]	8.48	0.9303

Compare expression of checked genes

Potri.003G066400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.