Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07990 382 / 1e-127 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT2G40890 336 / 6e-110 REF8, CYP98A3, C3H1 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) AT4G31940 332 / 2e-108 CYP82C4 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) AT4G12300 329 / 3e-107 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT3G48310 328 / 6e-107 CYP71A22 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) AT5G06900 328 / 1e-106 CYP93D1 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) AT1G13080 326 / 3e-106 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT3G48280 323 / 4e-105 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT4G36220 323 / 1e-104 CYP84A1, FAH1, F5H1 ferulic acid 5-hydroxylase 1 (.1) AT3G26330 321 / 4e-104 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G066800 [exp] 994 / 0 AT5G07990 379 / 2e-126 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G040200 [exp] 723 / 0 AT5G07990 389 / 2e-130 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G167900 [exp] 714 / 0 AT5G07990 369 / 1e-122 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.003G066400 [exp] 707 / 0 AT5G07990 385 / 9e-129 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G167800 [exp] 701 / 0 AT5G07990 353 / 2e-116 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.018G051300 [exp] 573 / 0 AT5G07990 379 / 9e-127 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.006G141400 [exp] 572 / 0 AT5G07990 373 / 6e-124 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G082900 [exp] 379 / 9e-127 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G083500 [exp] 376 / 1e-125 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013150 [exp] 691 / 0 AT5G07990 403 / 4e-136 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10008112 [exp] 668 / 0 AT5G07990 407 / 2e-137 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10017742 [exp] 566 / 0 AT5G07990 400 / 9e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10021620 [exp] 374 / 1e-124 AT5G07990 657 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10035502 [exp] 365 / 4e-121 AT5G06900 533 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10021158 [exp] 363 / 1e-120 AT5G07990 706 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10028897 [exp] 342 / 4e-112 AT2G45550 473 / 2e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10019457 [exp] 340 / 1e-111 AT3G48280 467 / 2e-161 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10033172 [exp] 338 / 9e-111 AT4G31500 540 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10017961 [exp] 337 / 4e-110 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.003G066600.1 pacid=42787034 polypeptide=Potri.003G066600.1.p locus=Potri.003G066600 ID=Potri.003G066600.1.v4.1 annot-version=v4.1 ATGGAGCTCTCTACTTTTGCTGCCCTTTTGCTTGCTACCGTAGCCGTGATAACCCTCTTCCGCCACCTTACCCGTCCCAAACTCAACCTGCCACCAGGCC CCAAACCGTGGCCTATAATTGGAAACTTGAACCTCCTTACAGGGCCGCTCCCACACAGAAACATGCACGCCCTTGTCCAGAAGTACGGGCCAATTATGCA GCTCAAGTTTGGTTCATTTCCAGTTGTTGTGGGCTCTTCTGTAGAAATGGCCGAAGCGGTTCTCAAAACCAATGATGTCAAACTGGCTGATCGTCCCAAA ATTGCTGCGGGAAAATACACCACGTATAACTACTCAAACATTACGTGGTCACAATACGGACCGTATTGGCGACAAGCACGTAAGATTTGCCTCATGGAAA TTTTTAGTCCCAAACGTCTAGACCAATTTGAGACTGTCCGCGTACAAGAGTTGCATGCTCTCCTAAGAAAGCTATTCGTGTCAGCTGGCAAGCCCATCAA TGCAAGAGATGAATTTTCAGATTTGAGTCTCAGTGTGATTAGTCGCCTGGTGTTGGGAAAGAACTACACAGTTAAAACTGGGAACCAAAAGCAGTACATG TCGCCAAAGGAGTTCAAGGAAATGATTGATGAGCTTTTCTTGCTTAATGGGGTGTTAGATATCGGAGACTCAATTCCGTGGCTCGCCTTCTTGGATTTGC AAGGCTATATTAAGAGAATGAAGGCCGTTGGCCAGTTGTTTGATGGGTTTCTTGAGTATACATTGAATGAGCATCAGCAGAGGAGAAAAGGAGTCAAGGA CTATGTGCCTCAGGACATGATGGATATCCTGTTGCAGCTTTCTGATGATCCTAATCTTGAAGTCCAGCTCGACAGGACTGCAGTCAAGGCATTTACAATG GATTTGATCGCAGGTGGGACTGAGAGTTCTGCGGTGACAACAGAATGGGCCATGGCCGAGCTCTTGAAAAAGCCGGAGTATTTCAAGAGGGCAAACGAAG AGCTAGATCGAGTGATTGGAAGAGATAGGTGGATTGAAGAGAAAGACATTGTTAACTTGCCATTTATCAACGCAATTTGCAAGGAGACCATGCGTTTGCA TCCCGTGTCACCCTTCCTAGTGCCGAGACTTGCTCGGGAAGACATCCAACTTGGTGGCTATGACATTCCCAAAGGCACCCGAGTCATGGTAAATGTATGG ACCATTGGAAGGGATGCAAGCATATGGGAGAAGCCACACGAATTTTGCCCAGAGAGGTTCATTGGCAAGTCGATTGATGTCAAGGGTCACAATTTCGAGC TGTTGCCATTTGGAGCTGGGAGGAGGATGTGTGTTGGGTACAGTCTAGGACTCAAGGTGATTCAAGCAAGTGTGGCAAATCTTCTGCACGGGTTTAAATG GAAGTTGCCTGGTGATATGAAAACGGAGGAGTTGAACATGCAGGAGATTTTTGGCCTTTCCACTCCTAAGCAAATCCCTCTTGTTGCAGAACTTGAACCC CGACTTCCAGCTCATATGTACTCTATGTGA
AA sequence Show only first row Show all	>Potri.003G066600.1 pacid=42787034 polypeptide=Potri.003G066600.1.p locus=Potri.003G066600 ID=Potri.003G066600.1.v4.1 annot-version=v4.1 MELSTFAALLLATVAVITLFRHLTRPKLNLPPGPKPWPIIGNLNLLTGPLPHRNMHALVQKYGPIMQLKFGSFPVVVGSSVEMAEAVLKTNDVKLADRPK IAAGKYTTYNYSNITWSQYGPYWRQARKICLMEIFSPKRLDQFETVRVQELHALLRKLFVSAGKPINARDEFSDLSLSVISRLVLGKNYTVKTGNQKQYM SPKEFKEMIDELFLLNGVLDIGDSIPWLAFLDLQGYIKRMKAVGQLFDGFLEYTLNEHQQRRKGVKDYVPQDMMDILLQLSDDPNLEVQLDRTAVKAFTM DLIAGGTESSAVTTEWAMAELLKKPEYFKRANEELDRVIGRDRWIEEKDIVNLPFINAICKETMRLHPVSPFLVPRLAREDIQLGGYDIPKGTRVMVNVW TIGRDASIWEKPHEFCPERFIGKSIDVKGHNFELLPFGAGRRMCVGYSLGLKVIQASVANLLHGFKWKLPGDMKTEELNMQEIFGLSTPKQIPLVAELEP RLPAHMYSM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.003G066600 [exp]	0	1
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.003G066800 [exp]	1.00	0.9989
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.002G120700 [exp]	1.41	0.9951
AT5G62200			Embryo-specific protein 3, (AT...		Potri.015G132900 [exp]	1.73	0.9854
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Potri.002G018300 [exp]	2.00	0.9852	CADL2
AT1G49660		ATCXE5	carboxyesterase 5 (.1)		Potri.009G103800 [exp]	4.89	0.9654
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.003G066400 [exp]	5.00	0.9827
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Potri.006G171268 [exp]	5.47	0.9802
AT1G09850		XBCP3	xylem bark cysteine peptidase ...		Potri.011G066900 [exp]	5.74	0.9682
AT1G65880		BZO1	benzoyloxyglucosinolate 1 (.1)		Potri.004G082000 [exp]	5.91	0.9788
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.014G019700 [exp]	6.70	0.9756

Compare expression of checked genes

Potri.003G066600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.