Plant FIBer expression Database

Potri.003G067266 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
ATCG00170 424 / 6e-140 ATCG00170.1, RPOC2 DNA-directed RNA polymerase family protein (.1)
AT4G35800 49 / 2e-06 RNA_POL_II_LSRNA_POL_II_LS, RNA_POL_II_LS, NRPB1 RNA polymerase II large subunit (.1)
AT5G60040 49 / 2e-06 NRPC1 nuclear RNA polymerase C1 (.1.2)
AT3G57660 43 / 0.0001 NRPA1 nuclear RNA polymerase A1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G028101
[exp]
452 / 2e-163 ATCG00170 516 / 5e-174 DNA-directed RNA polymerase family protein (.1)
Potri.013G140260
[exp]
457 / 4e-152 ATCG00170 2104 / 0.0 DNA-directed RNA polymerase family protein (.1)
Potri.001G341900
[exp]
49 / 1e-06 AT5G60040 1858 / 0.0 nuclear RNA polymerase C1 (.1.2)
Potri.005G107600
[exp]
49 / 2e-06 AT4G35800 2836 / 0.0 RNA polymerase II large subunit (.1)
Potri.006G055300
[exp]
42 / 0.0002 AT3G57660 1890 / 0.0 nuclear RNA polymerase A1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041856
[exp]
49 / 2e-06 AT4G35800 2541 / 0.0 RNA polymerase II large subunit (.1)
Lus10013536
[exp]
48 / 4e-06 AT5G60040 1506 / 0.0 nuclear RNA polymerase C1 (.1.2)
Lus10015971
[exp]
48 / 4e-06 AT5G60040 1745 / 0.0 nuclear RNA polymerase C1 (.1.2)
Lus10040493
[exp]
42 / 0.0002 AT3G57660 1802 / 0.0 nuclear RNA polymerase A1 (.1)
Lus10011299
[exp]
42 / 0.0002 AT3G57660 1801 / 0.0 nuclear RNA polymerase A1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04983 RNA_pol_Rpb1_3 RNA polymerase Rpb1, domain 3
PF04998 RNA_pol_Rpb1_5 RNA polymerase Rpb1, domain 5
Representative CDS sequence
>Potri.003G067266.1 pacid=42787374 polypeptide=Potri.003G067266.1.p locus=Potri.003G067266 ID=Potri.003G067266.1.v4.1 annot-version=v4.1
ATGGCCGAACGGGCCAATCTCTTCTTTCATAATAAAGTGATAGATGGAACTGCCATTAAACGAATTATTAGTCGATTCATAGATCACTTCGGAATGGCAT
ATACATCACACATCCTGGATCAAGTAAAGACTCTGGGTTTCCATCAAGCCACTGCTACATCTATTTCATTAGGAATTGATGATCTTTTAACAATACCTTC
GAAAGGATGGCTAGTCCAAGATGCTGAACAACAAATTTTGATTTTGGAAAAACATCATCATTATGGAAATGTACACGCGATAGAAAAATTACGTCAATCC
ATTGAGATATGGTATGCTACAAGTGAATATTTGCGACAAGAAATGAATCTGAATTTTAGGATGACGGAACCCTTTAATCCAGTCCATATAATAGGATTAA
TGTCGGATCCACAAGGACAAATGATTGATTTACCCATTCAAAGCAATCTACGGGAAGGATTGTCTTTAACAGAATATATCATTTCTTGCTATGGAGCCCG
AAAAGGAGTTGTGGATACTGCTATACGAACATCAGATGCTGGATATCTTACGCGCAGACTTGTTGAAGTAGTTAAACACATTGTTGTATGTAGAACAGAC
TGTGGCACCACCCAAAGGATTTCTGTGAGTTCTCGAAATGGAATGATACCGGAAAGAATTTTTATTCAAACATTAATAGGTCGTGTATTAGCAGACAATA
TATATATATGG
AA sequence
>Potri.003G067266.1 pacid=42787374 polypeptide=Potri.003G067266.1.p locus=Potri.003G067266 ID=Potri.003G067266.1.v4.1 annot-version=v4.1
MAERANLFFHNKVIDGTAIKRIISRFIDHFGMAYTSHILDQVKTLGFHQATATSISLGIDDLLTIPSKGWLVQDAEQQILILEKHHHYGNVHAIEKLRQS
IEIWYATSEYLRQEMNLNFRMTEPFNPVHIIGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAIRTSDAGYLTRRLVEVVKHIVVCRTD
CGTTQRISVSSRNGMIPERIFIQTLIGRVLADNIYIW

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
ATCG00170 ATCG00170.1, RP... DNA-directed RNA polymerase fa... Potri.003G067266
[exp]
0 1
ATCG00170 ATCG00170.1, RP... DNA-directed RNA polymerase fa... Potri.019G028101
[exp]
1.00 0.9970
ATCG00170 ATCG00170.1, RP... DNA-directed RNA polymerase fa... Potri.003G067332
[exp]
3.16 0.9824
ATCG00180 ATCG00180.1, RP... DNA-directed RNA polymerase fa... Potri.019G028000
[exp]
4.24 0.9792
ATCG00180 ATCG00180.1, RP... DNA-directed RNA polymerase fa... Potri.019G027860
[exp]
8.00 0.9790
ATCG00180 ATCG00180.1, RP... DNA-directed RNA polymerase fa... Potri.013G140850
[exp]
10.81 0.9782
Potri.011G074501
[exp]
11.48 0.9736
ATCG00170 ATCG00170.1, RP... DNA-directed RNA polymerase fa... Potri.019G027720
[exp]
14.86 0.9732
ATCG00905 ATCG00905.1, RP... ribosomal protein S12C (.1) Potri.001G305350
[exp]
15.55 0.9494
ATCG00190 ATCG00190.1, RP... RNA polymerase subunit beta (.... Potri.013G142232
[exp]
16.30 0.9699
Potri.007G061961
[exp]
17.49 0.9376

Potri.003G067266 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.