Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-LOX3.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17420 995 / 0 ATLOX3, LOX3 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) AT1G72520 978 / 0 ATLOX4, LOX4 Arabidopsis thaliana lipoxygenase 4, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G67560 708 / 0 ATLOX6, LOX6 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT3G45140 598 / 0 ATLOX2, LOX2 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) AT1G55020 571 / 0 ATLOX1, LOX1 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) AT3G22400 548 / 0 ATLOX5, LOX5 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G167700 [exp] 1146 / 0 AT1G17420 1444 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Potri.010G057100 [exp] 775 / 0 AT1G67560 1144 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.008G178000 [exp] 754 / 0 AT1G67560 1155 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.009G022400 [exp] 650 / 0 AT3G45140 1008 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015400 [exp] 642 / 0 AT3G45140 990 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.017G046200 [exp] 636 / 0 AT3G45140 979 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015500 [exp] 633 / 0 AT3G45140 975 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015300 [exp] 623 / 0 AT3G45140 943 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.013G022000 [exp] 564 / 0 AT1G55020 1311 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015666 [exp] 1082 / 0 AT1G17420 1381 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Lus10013151 [exp] 1058 / 0 AT1G17420 1397 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Lus10008113 [exp] 1057 / 0 AT1G17420 1396 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Lus10006429 [exp] 716 / 0 AT1G67560 1034 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Lus10031236 [exp] 613 / 0 AT3G45140 805 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10002545 [exp] 607 / 0 AT3G45140 991 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10031810 [exp] 605 / 0 AT3G45140 959 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10002547 [exp] 600 / 0 AT3G45140 971 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10039094 [exp] 592 / 0 AT3G45140 946 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10041646 [exp] 591 / 0 AT3G45140 939 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00305 [poplar] [flax] Lipoxygenase Lipoxygenase
Representative CDS sequence Show only first row Show all	>Potri.003G067600.4 pacid=42787193 polypeptide=Potri.003G067600.4.p locus=Potri.003G067600 ID=Potri.003G067600.4.v4.1 annot-version=v4.1 ATGGCAAAGGAGTTAGAAAAATGTCAGACAGGATTTACGACTTCGATGTGTACAATGATTTGGGAAATCCAGACAAGGGTAAATATTAACGCGGAGAGCC GAGTGGAGAAGCCAACGCCACTGTACGTGCCTAGAGATGAACAATTTGAGGAGTCTAAGCAAATTACATTCTCAAATGGGAGGCTTAGAGCCGTGCTTCA TACTCTAATACCAGCGATTAAGGCCAGCATTTCTGCAGATAATCAAGACTTTAGTAGCTTCTCAGACATTGGTGTTCTGTACAAAGAAGGGCTTCTTCTT AAAGTTGGATTGCAAGATGAAATCTGGAAGAATCTACCATTGCTCAAAGCGGTCAACAAGATACAAGAGTCTGGTGAGGGACAGCTCAAATATGACACGC CAAAGATTCTTTCCAGGGACAAGTTAGCCTGGTTGAGAGACGACGAATTTGCCCGTGAAACTGTGTCAGGAATAAACCCAGTCAGCATTGAGAGACTTAG GGTTTTTCCACCAAGAAGCAGTCTTGATCCTGAAATTTACGGTCCACTAGAATCTGCTCTCAAAGAAGAACACATTCTGGGCCATCTTAATGGCTTGTCC GTTTCACAGGCCCTGGAGGAAAATAAATTGTTTATGATTGATTACCATGATATTTATCTTCCATTTTTGGACCGGATTAATGCGCTTGATGGTAGAAAAG CATATGCAACTCGTACCATATTTTTCTTGACGCCTCTTGGGACACTCAAGCCCGTTGCTATAGAGCTTAGCCTCCCACCAGCAGGGCCGAATTCCCGATC AAAGCGAGTGGTTACACCTCCAGTGGATGCAACTGGCAGTTGGATTTGGCAACTGGCCAAGGCTCATGTTTGCTCCAACGATGCCAGTGTTCACCAGCTT GTCCATCACTGGTTACGCACACATGCTTCGCTGGAGCCATTTATACTGGCAGCACACAGGCAATTGAGTGCAATGCACCCTATATTCAAACTCTTGGATC CACACATGAGATATACACTAGAGATCAATGCCTTAGCCCGCCAAAACTTAATCAACGGTGATGGTGTTATAGAGTCTTGCTTCACTCCTGGCCAATATTC TATGGAGATTAGTGCTGCTGCCTACAAAAACTTTTGGCGTTTTGACAAGGAAAGCCTCCATGCCGATCTCATTCGAAGGGGAATGGCAGTGCCTGATCCG ACACAACCACATGGTCTAAAGCTTCTACTTGAGGACTACCCATATGCCCAAGATGGACTACTGATCTGGTCTGCCATAGAGAACTGGGTCCGCACCTATG TCGAGCATTACTACCCAGATTCAAGCATAGTCTGTAATGACAAAGAGCTCCAAGCGTGGTACTCTGAGTCCGTCAATGTTGGCCATTTCGATCTTCGTGA CGCTGATTGGTGGCCCAAGCTGGCCACGAGTGATGATCTTATCTGGATCCTCACCGTCCTCATTTGGCTCGCATCCGCACAACATGCCGCACTGAATTTT GGGCAGTATCCCTATGGTGGTTATGTGCCTAATAGACCAACCCTTATGAGAAGATTAATCCCGGAAGAAAATGACCCTGAGTACGCAAATTTCCTAGCTG ATCCACAAAAATACTTCCTATTAGCATTGCCAAATGTGCTGCAAGGCACAAAATTAATGGCTGTGATAGACACATTATCAACGCATTCACCAGACGAGGA GTACATAGGGGAACGGCAGCAGCCATCAATATGGACAGGCGACGCTGAAATGATTGAAGCGTTTTATGATTTTTCGGCGGAGATTCAGCAGATAGAGCAG GAGATCAACAGAAGGAATGCTGATCCTAGCCTTAAGCATCGGTGTGGCGCAGGGGTGCTCCCATATGAATTGCTAGCCCCTAGTTCAGGACCTGGGGTAA CATGTAGAGGTGTCCCAAATAGTGTTACAATATAA
AA sequence Show only first row Show all	>Potri.003G067600.4 pacid=42787193 polypeptide=Potri.003G067600.4.p locus=Potri.003G067600 ID=Potri.003G067600.4.v4.1 annot-version=v4.1 MAKELEKCQTGFTTSMCTMIWEIQTRVNINAESRVEKPTPLYVPRDEQFEESKQITFSNGRLRAVLHTLIPAIKASISADNQDFSSFSDIGVLYKEGLLL KVGLQDEIWKNLPLLKAVNKIQESGEGQLKYDTPKILSRDKLAWLRDDEFARETVSGINPVSIERLRVFPPRSSLDPEIYGPLESALKEEHILGHLNGLS VSQALEENKLFMIDYHDIYLPFLDRINALDGRKAYATRTIFFLTPLGTLKPVAIELSLPPAGPNSRSKRVVTPPVDATGSWIWQLAKAHVCSNDASVHQL VHHWLRTHASLEPFILAAHRQLSAMHPIFKLLDPHMRYTLEINALARQNLINGDGVIESCFTPGQYSMEISAAAYKNFWRFDKESLHADLIRRGMAVPDP TQPHGLKLLLEDYPYAQDGLLIWSAIENWVRTYVEHYYPDSSIVCNDKELQAWYSESVNVGHFDLRDADWWPKLATSDDLIWILTVLIWLASAQHAALNF GQYPYGGYVPNRPTLMRRLIPEENDPEYANFLADPQKYFLLALPNVLQGTKLMAVIDTLSTHSPDEEYIGERQQPSIWTGDAEMIEAFYDFSAEIQQIEQ EINRRNADPSLKHRCGAGVLPYELLAPSSGPGVTCRGVPNSVTI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Potri.003G067600 [exp]	0	1	Pt-LOX3.2
AT3G22250			UDP-Glycosyltransferase superf...		Potri.016G019400 [exp]	1.00	0.8929
AT5G21930		ATHMA8, HMA8, P...	ARABIDOPSIS HEAVY METAL ATPASE...		Potri.018G047800 [exp]	4.24	0.7815
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Potri.016G133500 [exp]	4.24	0.7988
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Potri.004G182100 [exp]	5.65	0.7966
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.004G103100 [exp]	5.91	0.7928
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Potri.018G104700 [exp]	6.92	0.7856
AT3G07320			O-Glycosyl hydrolases family 1...		Potri.002G247800 [exp]	11.22	0.7921	SGGN1.1
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Potri.007G031100 [exp]	19.07	0.7391
					Potri.019G071125 [exp]	19.49	0.7539
					Potri.019G071050 [exp]	20.12	0.7418

Compare expression of checked genes

Potri.003G067600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.