Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14075 753 / 0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) AT4G16070 595 / 0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) AT2G42450 114 / 1e-26 alpha/beta-Hydrolases superfamily protein (.1) AT3G49050 71 / 1e-12 alpha/beta-Hydrolases superfamily protein (.1) AT4G00500 69 / 4e-12 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G37710 62 / 5e-10 alpha/beta-Hydrolases superfamily protein (.1) AT1G05790 55 / 1e-07 lipase class 3 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G211200 [exp] 650 / 0 AT4G16070 751 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Potri.010G005800 [exp] 625 / 0 AT4G16070 715 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Potri.005G222000 [exp] 117 / 3e-27 AT2G42450 643 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G145900 [exp] 72 / 3e-13 AT3G49050 631 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G142700 [exp] 72 / 3e-13 AT3G49050 654 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G159200 [exp] 71 / 1e-12 AT4G00500 619 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.014G083600 [exp] 66 / 3e-11 AT4G00500 629 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G086900 [exp] 62 / 5e-10 AT5G37710 599 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G130000 [exp] 62 / 7e-10 AT5G37710 609 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008121 [exp] 791 / 0 AT3G14075 763 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10013158 [exp] 787 / 0 AT3G14075 754 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10015680 [exp] 774 / 0 AT3G14075 744 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10016834 [exp] 598 / 0 AT4G16070 750 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10037710 [exp] 587 / 0 AT4G16070 764 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10037690 [exp] 119 / 7e-32 AT3G14075 137 / 4e-39 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10024878 [exp] 115 / 7e-27 AT2G42450 618 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10000708 [exp] 108 / 4e-24 AT2G42450 610 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10037847 [exp] 78 / 5e-15 AT4G00500 636 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10030391 [exp] 78 / 5e-15 AT3G49050 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF01764 [poplar] [flax] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Potri.003G067900.1 pacid=42786882 polypeptide=Potri.003G067900.1.p locus=Potri.003G067900 ID=Potri.003G067900.1.v4.1 annot-version=v4.1 ATGGCAACTGCAACTATGGCTACAGCAGCCGGTGCAGCTGCACTTTTGTACTATACTTTGAACCGTAAATTAAGGTCTAGCACATCTCATGATGATGACG ATGGTGATAATGAGAATGACAGCGGTGACGCACCTAGTCGCGTTCATTTAGGCATTGAACGCGTATCACATAGGTTAATTCAAGCTCCCGCAACGTGGTT GGAAACGATCTCAACTTTGTCGGAGACTCTCAGGTTTACTTACTCTGAAACTCTAGGGAAGTGGCCTATTGGGGACTTGGCATTCGGGATCAACTTTCTA TTGAAGAGGCAGGGCACCTTACATGTTGGCAGTGTATTTGGCGGTGAAGATAGTGTACAGCTTAAAGGATTAGAAGTAGCAGCTGAACTTAGATACCTCT TAAACTTGTTGACCTTGTGTTGGCATTTCTCAAAAAAACCTTTTCCTTTGTTTTTAGAGGAGACAGGGTTTACTAAAGAAAGTGTTCTTCTTCAAGAACC CAAAGCAGGAATATTGAAGCCAGCTTTTACAATTTTAGTTGATCACAAGACAAAATATTTTTTCTTACTGATACGTGGAACACATAGCATTAAAGATACT TTGACAGCTGCAACTGGAGCTGTTGTGCCTTTTCATCACTCTGTTGTGCATGAGGGAGGAGTCAGCAATTTAGTTTTAGGCTATGCACATTGTGGGATGG TTGCAGCTGCCTGGTGGATTTCAAAGCTTGCAACACCTTGTCTCAAACAGGCGCTTGGGCAATTCCCTGATTATAAACTCAAGATTGTAGGGCACTCTCT TGGTGGAGGCACTGCTGCCCTTTTAACATATGTATTACGAGAACAGAAGGAATTATCGTCAACTACGTGTGTCACATTTGCTCCAGCTGCTTGTATGACA TGGGAATTGGCTGAATCAGGCAATGATTTCATTACTTCTGTTATAAATGGAGCTGACTTAGTGCCTACATTCTCAGCTGCTTCAGTTGATGATTTACGTG CAGAGGTGACAGCATCTGCATGGCTGAATGATTTGAGGAATCAGATTGAGCATACAAGAATTCTGAGTACTGTTTATCGTTCGGCATCGGCGTTGGGTTC CCGTCTGCCATCCATCGCCAGCGCTAGAGCAAAGGTTGCTGGGGCTGGGGCAATTTTGCGCCCTGTCTCCAATGGTACACAGGTTGTAATGAAGAGAGCA CAGAGCATGGCCCAGGCGGCATGGACCACACGCCCTTCCCTTCAGTTGTCTTCATGGTCGTGCATTGGACCCCGCCACCGAGCCACAGCTGCAAGTTCAA ATTCAGGAGAGGGAGGTTCCCCAGGATCTGGCTTAAAAGCTGAAACTTCAGAGCCTCTTCTTACATCTCCTGACAGTAACACAACCACAGCTTCCACTGG AACTATTGAACATCCTGCTTCTTCTGGAGGAGCAGAATGGACTTCAGAAATTGAATATTCTTGTACTGATGAAATGGCTTCACATGCTCATATGGGTGCT GATCTTGATCGTGGAGAGGACCTCATGAGTGATTCACATGAAGACCGAATGAATGAAGTGGAGTTGTGGCAACAGCTTGAGCATGAGCTGTATGATAGAT CAGATAGTGAGGATGCTGATGTGGCAAAGGAAATAAGGGAAGAAGAAGCAGCAGCCATTGCAGAGGTAGGTGAGGACCAGCCTGGAAGCACTGCTCCAGG AATGAAGGAAGTGCGCAGATTCTTCCCTCCAGGAAAGATTATGCATATTGTTACCCTGCATCTTGATAGTGCAGAGAGTGAAGGTGATACCCCCACCTCG AGTGGTTCTGACAACAACCAGCCACCGGTGGAGACTAAAGTTGGGATCTTCCGGACTCCCAGAACGCTTTATGGGAAGCTGAGGCTTTCTCAAACCATGG TCAGCGATCACTTTATGCCTGTTTATAGGAGGCAGATTGAAAAGCTAATTAAAGAACTTGAAGAGGAAGAGGCTGCTGGTAATCACAAGGACAACGCTGA GGTTGTGTTATAG
AA sequence Show only first row Show all	>Potri.003G067900.1 pacid=42786882 polypeptide=Potri.003G067900.1.p locus=Potri.003G067900 ID=Potri.003G067900.1.v4.1 annot-version=v4.1 MATATMATAAGAAALLYYTLNRKLRSSTSHDDDDGDNENDSGDAPSRVHLGIERVSHRLIQAPATWLETISTLSETLRFTYSETLGKWPIGDLAFGINFL LKRQGTLHVGSVFGGEDSVQLKGLEVAAELRYLLNLLTLCWHFSKKPFPLFLEETGFTKESVLLQEPKAGILKPAFTILVDHKTKYFFLLIRGTHSIKDT LTAATGAVVPFHHSVVHEGGVSNLVLGYAHCGMVAAAWWISKLATPCLKQALGQFPDYKLKIVGHSLGGGTAALLTYVLREQKELSSTTCVTFAPAACMT WELAESGNDFITSVINGADLVPTFSAASVDDLRAEVTASAWLNDLRNQIEHTRILSTVYRSASALGSRLPSIASARAKVAGAGAILRPVSNGTQVVMKRA QSMAQAAWTTRPSLQLSSWSCIGPRHRATAASSNSGEGGSPGSGLKAETSEPLLTSPDSNTTTASTGTIEHPASSGGAEWTSEIEYSCTDEMASHAHMGA DLDRGEDLMSDSHEDRMNEVELWQQLEHELYDRSDSEDADVAKEIREEEAAAIAEVGEDQPGSTAPGMKEVRRFFPPGKIMHIVTLHLDSAESEGDTPTS SGSDNNQPPVETKVGIFRTPRTLYGKLRLSQTMVSDHFMPVYRRQIEKLIKELEEEEAAGNHKDNAEVVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14075			Mono-/di-acylglycerol lipase, ...		Potri.003G067900 [exp]	0	1
AT2G20560			DNAJ heat shock family protein...		Potri.011G057601 [exp]	7.34	0.9338
AT2G26150	HSF	ATHSFA2	heat shock transcription facto...		Potri.006G226800 [exp]	19.13	0.9176
AT4G39210		APL3	Glucose-1-phosphate adenylyltr...		Potri.004G157100 [exp]	19.18	0.9157	APL3.1
AT2G32120		HSP70T-2	heat-shock protein 70T-2 (.1.2...		Potri.010G088600 [exp]	20.73	0.9179
AT4G10150			RING/U-box superfamily protein...		Potri.013G095100 [exp]	21.67	0.8467
AT2G20560			DNAJ heat shock family protein...		Potri.017G016000 [exp]	23.23	0.8760
AT1G53540			HSP20-like chaperones superfam...		Potri.001G238700 [exp]	23.81	0.9158	Pt-HSP17.13
AT4G10250		ATHSP22.0	HSP20-like chaperones superfam...		Potri.013G089200 [exp]	27.65	0.9125
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Potri.003G184000 [exp]	28.37	0.8329	HSP70.8
AT1G52560			HSP20-like chaperones superfam...		Potri.001G192600 [exp]	28.80	0.9121

Compare expression of checked genes

Potri.003G067900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.