Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19110 736 / 0 inter-alpha-trypsin inhibitor heavy chain-related (.1) AT1G72500 713 / 0 unknown protein AT1G08050 50 / 8e-06 Zinc finger (C3HC4-type RING finger) family protein (.1) AT2G38970 45 / 0.0002 Zinc finger (C3HC4-type RING finger) family protein (.1) AT3G54780 45 / 0.0002 Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2), Zinc finger (C3HC4-type RING finger) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G166800 [exp] 1323 / 0 AT1G19110 753 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Potri.018G062500 [exp] 794 / 0 AT1G19110 882 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Potri.009G010350 [exp] 48 / 3e-05 AT5G60710 763 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.001G082150 [exp] 47 / 5e-05 AT2G38970 466 / 4e-156 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.008G038450 [exp] 47 / 7e-05 AT2G38970 889 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.010G223766 [exp] 43 / 0.0007 AT2G38970 892 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008122 [exp] 959 / 0 AT1G19110 732 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Lus10013159 [exp] 916 / 0 AT1G19110 709 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Lus10039919 [exp] 733 / 0 AT1G19110 877 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Lus10027666 [exp] 722 / 0 AT1G19110 874 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Lus10041321 [exp] 47 / 5e-05 AT5G60710 730 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10016102 [exp] 44 / 0.0004 AT5G60710 764 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10021458 [exp] 44 / 0.0004 AT5G60710 738 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0128 [poplar] [flax] vWA-like PF13768 [poplar] [flax] VWA_3 von Willebrand factor type A domain
Representative CDS sequence Show only first row Show all	>Potri.003G068000.9 pacid=42786229 polypeptide=Potri.003G068000.9.p locus=Potri.003G068000 ID=Potri.003G068000.9.v4.1 annot-version=v4.1 ATGGCGAGAGAGTTTGCAACATGTGTGGAGTATGGATTGAGTCTTTCCAAGAGAATATACTACGGAAAGGAAATGACTCCGGCGGCAACGGCAGCGATGA CGCGGTCGGTGTCAGAAAAATCGTCAGATGTGGCAGAGAGTTACTTTCCGACAGCGGTGATGGCTTATGCGGTGGTATCGGAGCCGGAGCTGGTCGAAAA TCCGGACGTACCGAGTTACCAGCCGTACGTTCACGGGCGGTGTGAGCCACCGGCCTTGATACCGTTGCACATGCATGGAGTGGTGACTATGGAGATTGAT TGCTGTTTTGATCACGCAAACGTTTGTTTTAGCGGCGCGTGGCGCGTGCATTGTATTAAAGGGAATAGCAAGTGTGATGTCCGCATTGCTGTTCCCATGG GCGAGCAGGGTTCACTTCTAGGTGTCGAGGTTGATGTTCCTGGGAGATCTTGTCATAGCCAGTTGATCGAAGCAGAAGATGCAAATTACAAAGAAAAAGT AAGCAAAGGAGGGAATGGACGTTTAATGAGAGGCAGCGTATATACTTTTAAAATCCCACAGGTTGAAGGAGGGGCAACAGTCTCAATCAAAGTGATTTGG TCACAAAAATTACTTTATCATGAGGGTCAATTCAGTCTCAATGTACCATTTAGTTTTCCAGCATTTGTCAATCCCGTTGGCAAGAAGATTTCTAAGAGGG AAAAGATACTGTTAAATGTGAGCTCTGGTGTCGGTAAAGAAATTTTATGCAAGAGTACAAGTCATGCTCTAAAGGAGCTAAGGCGTGAAGTTGGTAAAAT GGGTTTCTTATATGACGCTGAAGTGCTGACTTGGTCAAGTGCTGACTTCAGTTTTTCCTACAATGTCTACTCAAAGGATTTATTTGGTGGTGTGCTTTTG CAGTCCCCATTATTACGAGATATTGATGACAGACAGATGTTTTGCTTCTATCTTTTTCCTGGAAACAACCAGAGCATGAAGGCTTTCAGGAAGGAAGTGA TATTTATAATTGATATTAGTGGAAGCATGAAAGGGGGTCCTTTTGAGAGTGCAAAGAATGGACTATTGTCATCTCTTCAGAAGCTCAACCCAGAAGATTC TTTCAACATTATAGCTTTCAAGATGGACACCTACCTATTTTCATCAGTAATGGAGCAGGCAACCGAAGAAGCAATAATAGAAGCTACCCGGTGGCTTAAT GATAAATTAACTGCAGATGGTGGCACCAACATTTTAGGGCCCCTCAAACAGGCTATAAAGCTGTTGGCTGAAACTACCAATTCAATTCCTGTCATATTCC TCATCACTGATGGAGCTGTTGAAGATGAAAGAGATATTTGTAATTTTGTAAAAGGTTATCTCCCAAGCGGGGGATCAATTTCTCTTCGCATAAGTACATT TGGTATAGGTACATATTGTAACCACCATTTCTTGCGAATGCTAGCACAGATTGGGAGGGGTCACTTTGATACTGCTTATGATGCAGATTCGGTTGATTTT CGAATGCAGAAATTATTCACAACTGCATCATCAATCATTCTAGCCGATATAACTGTTGATGCTTTGGAACATCTGGACTCGCTTGAGCAGTTGCTTCCGT TTTGTATCCCAGACCTCTCACGTGGAAGCCCATTGATTGTATCGGGCAGATATAGTGGAAACTTTCCAGACCCTGTCAAAATAAGTGGCACCTTGGCAGA TATGAGAAAGTTCACAATAGACTTGAAAGCACAAAAGACAAAGGATCTGCCATTTGATAGAGTAGTTGGAAGGAGACAAATTGATTTACTCACTGCTAAT GCATGGTTGTCAGGAAGTAAAGAGCTGGAACAAAAGGTTGCAAAAATGAGCATACAAACTGGGTTTCCATCTGAATACACCCTTATGGTTCTGCATCAGA CTCTTCAAGATGAGAAAGCGCCAGAAACAATTCTGATACAGGATGTATTCAACAAAATCAACCCTCTCAAGAAAATGGACTTGCAGAAGACAATCATGTT GGGGAATCTATGCGTTGGCTTCGGCAACTTGACCGCGACAGCTGAGAACATTCCTCCAGGAACCGAGGAGACAAAGTCATCTGAAGCAACCGAGATGCTG TTCAAGGCTGCTTCCAACTGCTGTGGCAGGGTGGTGGATCGCTGTTGTTGCATGTGCTTCATCCAAACTTGTTCATATATGAATAATCAATGCGCTATTG TCCTCTCCCAGATCTGCGCTGCCCTTGCTTGCGTTGAGTGCATAAACTGCTGCATCGAGCTTTGCGAATGCGGATAA
AA sequence Show only first row Show all	>Potri.003G068000.9 pacid=42786229 polypeptide=Potri.003G068000.9.p locus=Potri.003G068000 ID=Potri.003G068000.9.v4.1 annot-version=v4.1 MAREFATCVEYGLSLSKRIYYGKEMTPAATAAMTRSVSEKSSDVAESYFPTAVMAYAVVSEPELVENPDVPSYQPYVHGRCEPPALIPLHMHGVVTMEID CCFDHANVCFSGAWRVHCIKGNSKCDVRIAVPMGEQGSLLGVEVDVPGRSCHSQLIEAEDANYKEKVSKGGNGRLMRGSVYTFKIPQVEGGATVSIKVIW SQKLLYHEGQFSLNVPFSFPAFVNPVGKKISKREKILLNVSSGVGKEILCKSTSHALKELRREVGKMGFLYDAEVLTWSSADFSFSYNVYSKDLFGGVLL QSPLLRDIDDRQMFCFYLFPGNNQSMKAFRKEVIFIIDISGSMKGGPFESAKNGLLSSLQKLNPEDSFNIIAFKMDTYLFSSVMEQATEEAIIEATRWLN DKLTADGGTNILGPLKQAIKLLAETTNSIPVIFLITDGAVEDERDICNFVKGYLPSGGSISLRISTFGIGTYCNHHFLRMLAQIGRGHFDTAYDADSVDF RMQKLFTTASSIILADITVDALEHLDSLEQLLPFCIPDLSRGSPLIVSGRYSGNFPDPVKISGTLADMRKFTIDLKAQKTKDLPFDRVVGRRQIDLLTAN AWLSGSKELEQKVAKMSIQTGFPSEYTLMVLHQTLQDEKAPETILIQDVFNKINPLKKMDLQKTIMLGNLCVGFGNLTATAENIPPGTEETKSSEATEML FKAASNCCGRVVDRCCCMCFIQTCSYMNNQCAIVLSQICAALACVECINCCIELCECG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19110			inter-alpha-trypsin inhibitor ...		Potri.003G068000 [exp]	0	1
AT1G20760			Calcium-binding EF hand family...		Potri.002G008300 [exp]	8.77	0.8792
AT3G50620			P-loop containing nucleoside t...		Potri.005G136900 [exp]	18.73	0.8732
AT3G58810		ATMTPA2, MTP3, ...	ARABIDOPSIS METAL TOLERANCE PR...		Potri.011G150600 [exp]	22.27	0.8406	PtrMTP3.2
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.015G104700 [exp]	23.97	0.8666
AT1G47550		SEC3A	exocyst complex component sec3...		Potri.002G131400 [exp]	29.94	0.8494
AT2G37980			O-fucosyltransferase family pr...		Potri.006G095300 [exp]	30.88	0.8613
AT2G40820			unknown protein		Potri.016G033100 [exp]	33.13	0.8650
AT5G09225			unknown protein		Potri.016G036400 [exp]	34.29	0.7797
AT1G78690			Phospholipid/glycerol acyltran...		Potri.011G146800 [exp]	38.45	0.8154
AT1G54290			Translation initiation factor ...		Potri.017G037100 [exp]	39.52	0.8498

Compare expression of checked genes

Potri.003G068000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.