Plant FIBer expression Database

Potri.003G068350 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.003G068350.1 pacid=42786705 polypeptide=Potri.003G068350.1.p locus=Potri.003G068350 ID=Potri.003G068350.1.v4.1 annot-version=v4.1
ATGGCATTGGCTGCCTCCAGATTCCTCCTTTTTACCCTGAGCCACACACAGACGCAACAGCAACAACAACAGCAACAGCAGCAACAACAACTCTCTCTCT
CTCTCTCTCGCTCTCTCCAATCCAAAACAAAAGGGATTAGAATCAACCCACCAACAAAAACGAAAACCCTAACACCAAGAACTCCCCCCTTAATTTTTCA
AGAATTCAGATTCCAAAATCCAACTGTATTATTCATGAAAGATAAGAAAAAAGAAAACCCTTCAATTGAATACTGTGGTACGGATCCAAGAAAAAACTAA
AA sequence
>Potri.003G068350.1 pacid=42786705 polypeptide=Potri.003G068350.1.p locus=Potri.003G068350 ID=Potri.003G068350.1.v4.1 annot-version=v4.1
MALAASRFLLFTLSHTQTQQQQQQQQQQQQLSLSLSRSLQSKTKGIRINPPTKTKTLTPRTPPLIFQEFRFQNPTVLFMKDKKKENPSIEYCGTDPRKN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.003G068350
[exp]
0 1
AT5G14240 Thioredoxin superfamily protei... Potri.017G066200
[exp]
1.00 0.8452
AT5G40490 RNA-binding (RRM/RBD/RNP motif... Potri.001G344900
[exp]
10.72 0.7541
AT4G33650 APEM1, DRP3A, A... ABERRANT PEROXISOME MORPHOLOGY... Potri.017G041800
[exp]
18.30 0.6907 Pt-ADL2.1
AT3G26600 ARO4 armadillo repeat only 4 (.1) Potri.015G082800
[exp]
18.70 0.7369
AT1G32330 HSF ATHSFA1D heat shock transcription facto... Potri.003G095000
[exp]
20.39 0.7428 Pt-ATHSFA1.1
AT5G14240 Thioredoxin superfamily protei... Potri.001G334100
[exp]
21.49 0.7348
AT1G06110 SKIP16 SKP1/ASK-interacting protein 1... Potri.017G027000
[exp]
43.95 0.6789
AT1G09794 Cox19 family protein (CHCH mot... Potri.003G009800
[exp]
45.54 0.7093
AT3G13224 RNA-binding (RRM/RBD/RNP motif... Potri.001G370300
[exp]
49.14 0.7249
AT2G37025 TRFL8 TRF-like 8 (.1.2) Potri.006G126300
[exp]
52.15 0.6804

Potri.003G068350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.