Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72480 747 / 0 Lung seven transmembrane receptor family protein (.1) AT2G01070 527 / 0 Lung seven transmembrane receptor family protein (.1.2) AT1G61670 469 / 7e-162 Lung seven transmembrane receptor family protein (.1) AT1G10980 336 / 8e-110 Lung seven transmembrane receptor family protein (.1) AT5G18520 49 / 7e-06 Lung seven transmembrane receptor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G166500 [exp] 926 / 0 AT1G72480 738 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.001G209400 [exp] 498 / 3e-173 AT2G01070 650 / 0.0 Lung seven transmembrane receptor family protein (.1.2) Potri.016G137700 [exp] 497 / 8e-173 AT1G61670 683 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.006G109000 [exp] 493 / 2e-171 AT1G61670 691 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.006G214900 [exp] 42 / 0.0007 AT5G18520 612 / 0.0 Lung seven transmembrane receptor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008125 [exp] 815 / 0 AT1G72480 719 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10013162 [exp] 811 / 0 AT1G72480 715 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10036166 [exp] 550 / 0 AT2G01070 679 / 0.0 Lung seven transmembrane receptor family protein (.1.2) Lus10005732 [exp] 541 / 0 AT2G01070 678 / 0.0 Lung seven transmembrane receptor family protein (.1.2) Lus10030521 [exp] 468 / 8e-161 AT1G61670 612 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10012872 [exp] 463 / 2e-159 AT1G61670 604 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10025135 [exp] 298 / 4e-96 AT1G61670 441 / 4e-152 Lung seven transmembrane receptor family protein (.1) Lus10025219 [exp] 217 / 5e-68 AT1G61670 308 / 6e-104 Lung seven transmembrane receptor family protein (.1) Lus10025218 [exp] 189 / 1e-56 AT1G61670 303 / 2e-101 Lung seven transmembrane receptor family protein (.1) Lus10000821 [exp] 58 / 1e-08 AT5G18520 409 / 6e-140 Lung seven transmembrane receptor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0192 [poplar] [flax] GPCR_A PF06814 [poplar] [flax] Lung_7-TM_R Lung seven transmembrane receptor
Representative CDS sequence Show only first row Show all	>Potri.003G068500.4 pacid=42784710 polypeptide=Potri.003G068500.4.p locus=Potri.003G068500 ID=Potri.003G068500.4.v4.1 annot-version=v4.1 ATGTTTAGGGTCTATGAATCTATATTGTTTTGTGTGTGGTTGTTTACGAGCTTGATAGTTGAAGGTTCAGTTCACGAGTATAAAGGGGAGAGGTTTGTGG GCAAAGGGAATGCCTTCGTGGTTCACGGCGGCAGTGAAGGGATTTACTCTTCTGCCTCTGAAAATGTCAATGAGAAGAGTGTCCTTCCTGCTAATGGGGA CTCTTATATACGATTTGAAAAGATTACATTCCAGAGAACCCAGGAATTTTCCAACTTTAGTTCGGGGTTGGTACAAGCTATTGTTTTTGAGGTAGAAGAT AGAGAGTCAATTGGGGGTTCTGCCTATGGTGGTCAAAGAGCTGTCTGCTGCACAGCTGATCTTGCAAAGTTGGGTGTGTGTTCAGAAGGAGAAATCATTC ATCGCCCATCAACTAAAAATCCTGGCTGGCCTCAGGTCTTTGGTGTTGCATTCTATGCAGACGAGCTAGTTGCAACATTGCCATCAAAATCAATACAGAT TTCCAGAACTGGGATGTATAATTTGTATTTCATGCATTGTGATCCTAATCTTAAAGAGGTAGTTGTAGAGGGGAATACTATATGGAAAAATCCCAGTGGT TATTTACCTGGTAGAATGGCACCACTCATGAAATTTTACGGGTTCATGTCCCTTGCTTTTGTTATACTTGGATTATTCTGGTTCTCTCAGTATGCAAGAT TCTGGAAAGAAGTTTTTCCATTGCAAAACTGCATAACATTGGTGATAACACTAGGCATGTTCGAGATGGCTTTCTGGTATTTTGACTATGCTGAATTCAA TGAGACTGGAATTAGGCCAACTGGTATCACTGTATGGGCAGTTACTTTTGGTACTATTAAACGTTCAGTTGCACGCCTTGTCATCTTGATGGTTTCAATG GGCTATGGTGTTGTGAGACCTACCTTAGGTGGTCTTACATCGAAGGTGCTATTGGTTGGAGTGACCTTTTTTGTGGCATCTGAAGTGCTTGAATTAGTAG AAAATGTTGGTGCTGTTAGTGACCTTTCTGGCAAGGCCAAACTTTTTTTGGTTCTTCCCGTGGCTTTCTTGGATGCTTTCATCATTATTTGGATATTTAA GTCACTTTCTGCCACTTTAAGTAAGCTTCAGGCTAGGAGGATGATGGTCAAGCTGGATATATACCGGAAATTCACTAATGCTCTGGTAGTAGCTGTTATT GTGTCAGTGGGTTGGATATGCTATGAGTTGTATTTCAAGTCAAAAGATGTTTACAATGAGCAGTGGCAGAATGCATGGGTCATCCCAGCTTTCTGGCAAC TCCTTTCCTTTTCTCTTCTATGCATCATCTGTGCTCTTTGGGCTCCCTCCCAGAACTCAATGCGATACGCTTACTCAGATGATGCAAGCGATGAGTTTGA CAGGGATGATGGCACTTTAACACTCATTAAACCATCCACAATACCTTCTAAGGATGTTAGAAGTTCGCCAGAACCCATACCAGTGCACACCAGCAATGGA GCATCTAATGGTGATTTGGAAGAAGATAAGACAGAATAA
AA sequence Show only first row Show all	>Potri.003G068500.4 pacid=42784710 polypeptide=Potri.003G068500.4.p locus=Potri.003G068500 ID=Potri.003G068500.4.v4.1 annot-version=v4.1 MFRVYESILFCVWLFTSLIVEGSVHEYKGERFVGKGNAFVVHGGSEGIYSSASENVNEKSVLPANGDSYIRFEKITFQRTQEFSNFSSGLVQAIVFEVED RESIGGSAYGGQRAVCCTADLAKLGVCSEGEIIHRPSTKNPGWPQVFGVAFYADELVATLPSKSIQISRTGMYNLYFMHCDPNLKEVVVEGNTIWKNPSG YLPGRMAPLMKFYGFMSLAFVILGLFWFSQYARFWKEVFPLQNCITLVITLGMFEMAFWYFDYAEFNETGIRPTGITVWAVTFGTIKRSVARLVILMVSM GYGVVRPTLGGLTSKVLLVGVTFFVASEVLELVENVGAVSDLSGKAKLFLVLPVAFLDAFIIIWIFKSLSATLSKLQARRMMVKLDIYRKFTNALVVAVI VSVGWICYELYFKSKDVYNEQWQNAWVIPAFWQLLSFSLLCIICALWAPSQNSMRYAYSDDASDEFDRDDGTLTLIKPSTIPSKDVRSSPEPIPVHTSNG ASNGDLEEDKTE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72480			Lung seven transmembrane recep...		Potri.003G068500 [exp]	0	1
AT1G62640		KAS III, KASIII	3-ketoacyl-acyl carrier protei...		Potri.001G120900 [exp]	2.23	0.8934	Pt-KAS.2
AT1G09210		AtCRT1b	calreticulin 1b (.1)		Potri.013G009500 [exp]	4.24	0.8812
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Potri.006G063000 [exp]	6.00	0.8925	AVP.5
AT5G64570		ATBXL4, XYL4	ARABIDOPSIS THALIANA BETA-D-XY...		Potri.001G206800 [exp]	11.83	0.8379	XYL4.2
AT3G25800		PP2AA2, PR65, P...	protein phosphatase 2A subuni...		Potri.010G127500 [exp]	15.29	0.8160	PDF1.3
AT4G38510			ATPase, V1 complex, subunit B ...		Potri.009G137800 [exp]	16.43	0.8145
AT3G54770			RNA-binding (RRM/RBD/RNP motif...		Potri.008G044700 [exp]	21.42	0.8319
AT5G35160			Endomembrane protein 70 protei...		Potri.006G189300 [exp]	24.57	0.8683
AT3G60740		TFCD, EMB133, C...	TITAN 1, TUBULIN FOLDING COFAC...		Potri.014G067400 [exp]	28.37	0.8398	Pt-TTN1.1
AT3G53110		LOS4	LOW EXPRESSION OF OSMOTICALLY ...		Potri.006G119000 [exp]	29.32	0.7856

Compare expression of checked genes

Potri.003G068500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.