Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72470 811 / 0 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT3G14090 776 / 0 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1) AT1G54090 741 / 0 ATEXO70D2 exocyst subunit exo70 family protein D2 (.1) AT5G50380 426 / 3e-141 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1) AT5G52340 361 / 2e-116 ATEXO70A2 exocyst subunit exo70 family protein A2 (.1) AT3G29400 354 / 2e-113 ATEXO70E1 exocyst subunit exo70 family protein E1 (.1) AT5G03540 347 / 1e-112 ATEXO70A1 exocyst subunit exo70 family protein A1 (.1.2.3) AT5G58430 348 / 1e-111 ATEXO70B1 exocyst subunit exo70 family protein B1 (.1) AT5G13150 332 / 6e-105 ATEXO70C1 exocyst subunit exo70 family protein C1 (.1) AT5G13990 315 / 5e-98 ATEXO70C2 exocyst subunit exo70 family protein C2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G166400 [exp] 1073 / 0 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.015G094800 [exp] 454 / 3e-152 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.012G097100 [exp] 449 / 4e-150 AT5G50380 754 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.017G093966 [exp] 375 / 6e-122 AT3G29400 597 / 0.0 exocyst subunit exo70 family protein E1 (.1) Potri.008G017800 [exp] 371 / 4e-120 AT5G03540 960 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Potri.010G241800 [exp] 363 / 4e-117 AT5G03540 988 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Potri.016G071000 [exp] 360 / 8e-116 AT5G52340 1021 / 0.0 exocyst subunit exo70 family protein A2 (.1) Potri.019G124000 [exp] 358 / 3e-115 AT5G58430 726 / 0.0 exocyst subunit exo70 family protein B1 (.1) Potri.013G152900 [exp] 356 / 1e-114 AT5G58430 781 / 0.0 exocyst subunit exo70 family protein B1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008126 [exp] 920 / 0 AT1G72470 862 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10013163 [exp] 799 / 0 AT1G72470 740 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10016764 [exp] 436 / 4e-145 AT5G50380 807 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10022459 [exp] 432 / 2e-144 AT5G50380 749 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10031956 [exp] 374 / 5e-121 AT3G29400 581 / 0.0 exocyst subunit exo70 family protein E1 (.1) Lus10035146 [exp] 374 / 9e-121 AT3G29400 579 / 0.0 exocyst subunit exo70 family protein E1 (.1) Lus10043432 [exp] 346 / 2e-110 AT5G03540 1004 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Lus10021283 [exp] 340 / 2e-108 AT5G52340 995 / 0.0 exocyst subunit exo70 family protein A2 (.1) Lus10015757 [exp] 333 / 3e-105 AT5G13150 585 / 0.0 exocyst subunit exo70 family protein C1 (.1) Lus10034151 [exp] 331 / 2e-104 AT5G03540 991 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [poplar] [flax] Vps51 PF03081 [poplar] [flax] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Potri.003G068700.1 pacid=42786857 polypeptide=Potri.003G068700.1.p locus=Potri.003G068700 ID=Potri.003G068700.1.v4.1 annot-version=v4.1 ATGGAACCACCAGAAAATTACAGCACGGATACTTCTTTTGCAGTACCTTTTGAAGATGCCCAGAAGATAATTCTAAGGTGGGACTCGACAGCATCTGAAG AAGCAAGAGAAAGAATGATCTTTGATGGAGATCGTCAAGAAGTGGATCTATACTTACAAGCTGTTGATGAAATCCAAAAGTCTATGTCATCAACTTCAAT TTCATCTGACCATCATGATCAAGATAGTAATGATAACAAGGTCACCTCTGCTATACAGATCGCCATGGCTAGACTTGAAGATGAGTTCCGCAATATCCTT ATTAACCATACAAGCCCTGTTGAACTGGACTCTATTATCATTTCTGATCGTGCTTCTTTGAACCATTATACTAGTTCGGTAAGAAGCATCACTGAATTTG ATCAGGAGGAAGTTCGTCGTGGTGGCGGTGATCATGATGATGGTTTGGATCCTATACAGCGTGCAGATTCGACTAATAGTAGTGCCAGTTATCGATCTAC GAGTAGTATTCGTGAGATCGATCTGATTCCTCTAGAAGCTGCAGCAGACCTTCAGTCCATTGCGAAACGGATGATCTCTGCTGGGTACTTTAGGGAGTGT ATCCAGGTCTATGGGAGTGTGAGAAAATCAGCTTTGGATGCGAGTTTTCGGAGACTTGGGATTGAGAAATTGAGTATTGGGGATATTCAGAGACTGGAAT GGGAGACTTTGGAGACCAAGATCAGGAGGTGGATTCGTGCGGCCAAGGTTTGTGTTAGGATATTGTTTGCTAGTGAGAAGCAGCTTTGTGAGGAGATTTT TTATGGGATTGGTACTGCCATTGACGATGCTTGTTTTATGGAGACTGTCAAGGGTCCAGCTATTCAATTGTTTAATTTTGCTGAGGCAATTAGTATTAGC AGGAGATCTCCTGAGAAAATGTTCAAGATTTTGGACTTACATGATGCTTTGATGGGCTTGTCGCCTGATATTGATGTTGTTTTTGAATCAAAATCTGCTG ATTCCGTTCGAGTTCAGGCTGCTGAGATTCTGTCAAGATTGGCTGAGGCTGCCAGGGGGATTTTATCTGAGTTTGAGAGTGCTGTTTTGCGTGAGCCCTC CACGGTTGCGGTGCCTGGAGGGACAATTCATCCATTGACAAGGTATGTGATGAATTATATCAGTTTGATTTCGGATTATAAGCAGACCTTGATTGAGCTT ATTATGTCAAAACCATCGACTGGCTCGAGATATTCGGGTGATCCAACTACCCCTGATATGGAATTTGCTGAACTAGAGGGGAAAACCCCTTTAGCCCTTC ATTTGATTTGGATTATTGTGATTTTGCAATTCAATTTGGAGGGCAAGTCCAAGCACTACAAGGATGCATCATTGGCCCATCTGTTTATGATGAACAATGT TCACTATATTGTTCAAAAGGTCAAAGGCTCGCCAGAATTGCGAGAAATGATTGGAGACGATTACTTGAGAAAGCTGACTGGGAAATTTAGGCAGGCAGCT ACTAGTTACCAGAGAGCAACTTGGGTAAGTGTTTTGTATTGCTTGAGGGATGAGGGTTTACATGTAAGTGGGAGTTTCTCTTCTGGTGTCTCAAAGAGTG CTTTGAGAGAGAGATTTAAGACCTTCAATGCTATGTTTGAGGAGGTTCACAGGACTCAAGCAACATGGTTGATTCCAGATTCTCAACTTAGGGAGGAGCT TCGAATTTCTATATCTGAGAAGTTGATCCCAGCTTATAGGTCATTTCTTGGACGGTTCAGGAGTCATATAGAGAGTGGAAAGCATCCAGAAAATTATATC AAGTATTCAGTGGAGGATTTAGAGAATGCGGTCTTGGATTTCTTCGAGGGTTATCCTGTATCTCAGCACCTGAGGAGGAGATCCCAGTGA
AA sequence Show only first row Show all	>Potri.003G068700.1 pacid=42786857 polypeptide=Potri.003G068700.1.p locus=Potri.003G068700 ID=Potri.003G068700.1.v4.1 annot-version=v4.1 MEPPENYSTDTSFAVPFEDAQKIILRWDSTASEEARERMIFDGDRQEVDLYLQAVDEIQKSMSSTSISSDHHDQDSNDNKVTSAIQIAMARLEDEFRNIL INHTSPVELDSIIISDRASLNHYTSSVRSITEFDQEEVRRGGGDHDDGLDPIQRADSTNSSASYRSTSSIREIDLIPLEAAADLQSIAKRMISAGYFREC IQVYGSVRKSALDASFRRLGIEKLSIGDIQRLEWETLETKIRRWIRAAKVCVRILFASEKQLCEEIFYGIGTAIDDACFMETVKGPAIQLFNFAEAISIS RRSPEKMFKILDLHDALMGLSPDIDVVFESKSADSVRVQAAEILSRLAEAARGILSEFESAVLREPSTVAVPGGTIHPLTRYVMNYISLISDYKQTLIEL IMSKPSTGSRYSGDPTTPDMEFAELEGKTPLALHLIWIIVILQFNLEGKSKHYKDASLAHLFMMNNVHYIVQKVKGSPELREMIGDDYLRKLTGKFRQAA TSYQRATWVSVLYCLRDEGLHVSGSFSSGVSKSALRERFKTFNAMFEEVHRTQATWLIPDSQLREELRISISEKLIPAYRSFLGRFRSHIESGKHPENYI KYSVEDLENAVLDFFEGYPVSQHLRRRSQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72470		ATEXO70D1	exocyst subunit exo70 family p...		Potri.003G068700 [exp]	0	1
AT3G10960		ATAZG1	AZA-guanine resistant1 (.1)		Potri.013G083300 [exp]	10.00	0.8086
AT2G06530		VPS2.1	SNF7 family protein (.1)		Potri.018G065100 [exp]	10.95	0.7316
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Potri.014G035500 [exp]	12.44	0.8422
					Potri.006G063600 [exp]	13.74	0.8151
AT1G34750			Protein phosphatase 2C family ...		Potri.005G164600 [exp]	17.43	0.8164
AT4G28910		NINJA	novel interactor of JAZ (.1.2....		Potri.018G085100 [exp]	17.54	0.7918
AT1G27100			Actin cross-linking protein (....		Potri.010G035100 [exp]	21.72	0.7998
AT4G09760			Protein kinase superfamily pro...		Potri.005G197500 [exp]	31.17	0.8025
AT2G19460			Protein of unknown function (D...		Potri.006G147700 [exp]	36.33	0.8046
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Potri.016G004900 [exp]	37.50	0.7115

Compare expression of checked genes

Potri.003G068700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.