Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G42880 471 / 6e-159 Leucine-rich repeat protein kinase family protein (.1) AT5G20690 456 / 1e-152 Leucine-rich repeat protein kinase family protein (.1) AT1G72460 422 / 1e-139 Leucine-rich repeat protein kinase family protein (.1) AT3G20190 366 / 2e-117 Leucine-rich repeat protein kinase family protein (.1) AT5G35390 354 / 5e-113 Leucine-rich repeat protein kinase family protein (.1) AT2G07040 340 / 4e-108 ATPRK2A Leucine-rich repeat protein kinase family protein (.1) AT3G02880 300 / 6e-93 Leucine-rich repeat protein kinase family protein (.1) AT5G16590 295 / 6e-91 LRR1 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) AT2G26730 295 / 1e-90 Leucine-rich repeat protein kinase family protein (.1) AT1G60630 293 / 5e-90 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G166300 [exp] 959 / 0 AT3G42880 513 / 6e-174 Leucine-rich repeat protein kinase family protein (.1) Potri.006G139700 [exp] 551 / 0 AT3G42880 611 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G078600 [exp] 383 / 9e-124 AT5G35390 660 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G147300 [exp] 381 / 5e-123 AT5G35390 629 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.014G002700 [exp] 379 / 1e-122 AT3G20190 415 / 1e-136 Leucine-rich repeat protein kinase family protein (.1) Potri.007G002000 [exp] 373 / 2e-120 AT3G20190 437 / 4e-145 Leucine-rich repeat protein kinase family protein (.1) Potri.018G074300 [exp] 292 / 1e-89 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G154700 [exp] 281 / 1e-85 AT1G48480 309 / 2e-96 receptor-like kinase 1 (.1) Potri.019G131500 [exp] 280 / 4e-85 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015678 [exp] 561 / 0 AT1G72460 466 / 7e-157 Leucine-rich repeat protein kinase family protein (.1) Lus10008128 [exp] 497 / 1e-169 AT1G72460 412 / 8e-137 Leucine-rich repeat protein kinase family protein (.1) Lus10027597 [exp] 370 / 9e-119 AT5G35390 603 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038128 [exp] 355 / 2e-117 AT5G20690 462 / 2e-159 Leucine-rich repeat protein kinase family protein (.1) Lus10022946 [exp] 366 / 3e-117 AT5G35390 593 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037688 [exp] 353 / 3e-116 AT3G42880 337 / 2e-110 Leucine-rich repeat protein kinase family protein (.1) Lus10013165 [exp] 354 / 6e-113 AT5G20690 470 / 5e-158 Leucine-rich repeat protein kinase family protein (.1) Lus10020183 [exp] 347 / 5e-110 AT4G31250 599 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10017144 [exp] 346 / 6e-109 AT5G35390 597 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10005175 [exp] 325 / 4e-103 AT5G20690 417 / 1e-138 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.003G068800.1 pacid=42785452 polypeptide=Potri.003G068800.1.p locus=Potri.003G068800 ID=Potri.003G068800.1.v4.1 annot-version=v4.1 ATGGCCTTGGATTGGCATTTCCATCCTTTTCTTTTTCTCTTCATCATTTTTACCCTCCAATTTTCATTGACATCTTCAGTATCTGAATCTGAATCTTTGA TCAGGCTTAAAAAATCATTTACCAATGCTGGTGCTATTAGTTCTTGGCTGCCAGGCTCTGTCCCTTGCAATAAACAAACTCATTGGCGTGGAGTTGTTTG TTTCAATGGAATTGTCACGGTTCTTCAGCTCGAAAACATGGGCCTATCAGGAACCATTGATGTTGATGCATTGGCTAATATGCAGGGACTCAGAAGCTTA AGCTTTGCTTATAATTATTTTACAGGTACAATTCCTGCACTCAATCGTTTAGGCTATTTAAAGGCTATATACTTGAGAGGGAACCAGTTTTCTGGTGAGA TTCCCTCGGATTTCTTCTTGAAAATGAAGTCGCTGAAGAAGGTTTGGATTTCGGATAACAACTTTTCTGGAGGAATTCCATCATCATTGGCCGAGTTGTC TCGGCTTAGCGAATTACATCTCGAGAACAATCAATTTAGTGGGACTATTCCATCTATCGATCAACCAACCTTGATGTCATTTAATGTATCAAACAATAAG CTGGATGGGGAAATCCCACCTAAATTAGCAAGATTCAATTCTAGTTCCTTTAGAGGAAATGATGGTCTATGCGGACAAAAAATCGGTAAAGGGTGTGAAT TGCAAGGATCTTCAGAACCACCTACCGATGTTGGGGTAGATGCCAATATGATGGTTAGCGAAGGCAGCGATAATAAAAGAAACAGCGTTACGAAGACAGT CGCAGGGTTAGTAACTCTGGCTGTGTTGCTTGTTTCAATAATAGCCGTGGTTATCTTTAGAATGTGGCGAAGGGGCAAGGATTTTGATGCGATTGAAAGT AGAAGTAGTGGTAATGCAGCAGCACTTGAGGTGCAAGTTTCGTTGTCGAATAGACCGAAGGAAATGGAAGTTGCCAAAAAGATGGGATCAGGCCATAAAG GATCTAATAATGGCAGGGGTGTTGTAGGTGAATTAGTTATTGTGAACAATGAAAAGAGCGTATTTGGGCTACCAGATTTGATGAAAGCTTCAGCAGAAGT GCTTGGAAATGGAGTATTGGGGTCTTCTTATAAAACGCAGATGGCTAACGGAGTTGTGGTGGTGGTCAAGAGAATGAGAGAAATGAATACGTTGTCCAAA AGTCAATTTAATGCAGAAATCAGAAAGCTTGGAAGACTGCATCATCCTAATATTTTGACACCATTGGCTTTTCATTATCGACCGGATGAGAAGCTGTTGA TCTATGATTTCGTGCCCAAAGGCAGTCTGCTTTATTTGTTGCACGGTGATCGAGGACCATCACATGCTGAACTCAGTTGGTCTGTTCGTCTCAAGATTGT TCAAGGAATTGCAAAAGGTTTGGGCTATCTTCATACAGAACTTGCTCCCTCTAACTTGCCTCATGGCAATCTCAAATCAAGCAATGTCTTTCTCAGCAAT GATAACGAGCCATTACTTTCAGAATTTGGATTAAGTCCCCTGATTAGCCCTCCAATGTTGGCTCAAGCATTGTTTGGTTATGAAGCCCCAGAAGCAGCGG AATTTGGCGTATCACCAAAGTGCGACGTGTACTGTCTAGGAATAATCATTCTTGAAATCCTTTCAGGAAAAATTCCTTCTCAATATCTCAACAATGCCAG GGGAGGGACTGATGTAGTCCATTGGGTGGAATCTGCAATTTCCGATGGGAGAGAAACTGATTTTCTTGATCCTGAAATTGCAAGCTCAAAAAACTCACTT TGTCAGATGAAGCAGCTCCAAGGCATTGGAGCTGCTTGTGTCAAAAGAAATCCTGAGCAACGGTTAGACATCACACAAGCTATTCAACTGATACAGGAGA TAAAATTGGAAGATGGAGACTATGCGGGCGGGACAACGCAAGTTTTACCATCACTTCGTGATGGATATGCAGATGCATAA
AA sequence Show only first row Show all	>Potri.003G068800.1 pacid=42785452 polypeptide=Potri.003G068800.1.p locus=Potri.003G068800 ID=Potri.003G068800.1.v4.1 annot-version=v4.1 MALDWHFHPFLFLFIIFTLQFSLTSSVSESESLIRLKKSFTNAGAISSWLPGSVPCNKQTHWRGVVCFNGIVTVLQLENMGLSGTIDVDALANMQGLRSL SFAYNYFTGTIPALNRLGYLKAIYLRGNQFSGEIPSDFFLKMKSLKKVWISDNNFSGGIPSSLAELSRLSELHLENNQFSGTIPSIDQPTLMSFNVSNNK LDGEIPPKLARFNSSSFRGNDGLCGQKIGKGCELQGSSEPPTDVGVDANMMVSEGSDNKRNSVTKTVAGLVTLAVLLVSIIAVVIFRMWRRGKDFDAIES RSSGNAAALEVQVSLSNRPKEMEVAKKMGSGHKGSNNGRGVVGELVIVNNEKSVFGLPDLMKASAEVLGNGVLGSSYKTQMANGVVVVVKRMREMNTLSK SQFNAEIRKLGRLHHPNILTPLAFHYRPDEKLLIYDFVPKGSLLYLLHGDRGPSHAELSWSVRLKIVQGIAKGLGYLHTELAPSNLPHGNLKSSNVFLSN DNEPLLSEFGLSPLISPPMLAQALFGYEAPEAAEFGVSPKCDVYCLGIIILEILSGKIPSQYLNNARGGTDVVHWVESAISDGRETDFLDPEIASSKNSL CQMKQLQGIGAACVKRNPEQRLDITQAIQLIQEIKLEDGDYAGGTTQVLPSLRDGYADA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G42880			Leucine-rich repeat protein ki...		Potri.003G068800 [exp]	0	1
AT1G16930			F-box/RNI-like/FBD-like domain...		Potri.011G121400 [exp]	3.60	0.6120
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Potri.017G126000 [exp]	6.92	0.6292
AT3G08690		ATUBC11, UBC11	ubiquitin-conjugating enzyme 1...		Potri.008G134400 [exp]	17.94	0.6116	Pt-UBC.3
					Potri.006G279850 [exp]	23.66	0.7323
AT1G67980		CCOAMT	caffeoyl-CoA 3-O-methyltransfe...		Potri.010G104400 [exp]	47.14	0.5423	CAML3
AT5G59970			Histone superfamily protein (....		Potri.002G143850 [exp]	66.33	0.5640
					Potri.016G004700 [exp]	114.31	0.5068
AT5G34885			Protein of unknown function (D...		Potri.004G109232 [exp]	230.99	0.5494
					Potri.006G157801 [exp]	272.77	0.5140

Compare expression of checked genes

Potri.003G068800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.