Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72390 740 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G165800 [exp] 1452 / 0 AT1G72390 778 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008132 [exp] 943 / 0 AT1G72390 867 / 0.0 unknown protein Lus10013169 [exp] 911 / 0 AT1G72390 746 / 0.0 unknown protein Lus10013170 [exp] 61 / 3e-11 AT1G72390 74 / 3e-17 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G069200.5 pacid=42787118 polypeptide=Potri.003G069200.5.p locus=Potri.003G069200 ID=Potri.003G069200.5.v4.1 annot-version=v4.1 ATGGGGGTCTCTTTTAAGGTCTCAAAAACTGGTACCAGGTTCCGCTCAAAACCTTTTGTTCAATCAGATACTGTTCTTGATGAGGTCTCAGAAAATTCTG AAGAGAGCTCGGTGATTGGCTCAAAGAACGAATCATCTACGAGAAAGGGCGAGGCTGACATCTTTGAGGGTGCTGAGGATGCATTAGCTGTCTCAAGTTT ATCCTTCTCTGGACAAGAAGTTTCATTGACATTGAATCTCTATCCAGATGGATATTCTATAGGAAAACCCTCAGAGATAGAGGCTGCTCATCAGGCTCCA CTTCAAGATGGTCAGAAGTTGTTGCATCCATATGATAAGACTTCTGAAACGCTCTTTTCAGCAATTGAGTCTGGCCGGTTGCCTGGAGATATTCTGGATG ATATTCCATGTAAATATGTAAATGGAACACTTGTATGCGAGGTGCGTGATTATCGGAAATGCGCTTCCAAGCAGGGGTCTAGCGTTCCATTTATGGATGG GCTCCCTATTGTAAATAAAGTATGCCTTAGGATGTCATTGGAGAATGTAGTGAAGGATATCCCATTGATCTCTGATAATTCTTGGACGTATGGTGATTTG ATGGAAGTAGAATCTCGGATTTTGAAAGCATTGCAACCACAGCTTTGTCTAGATCCTACTCCCAAATTGGACAGGCTCTGTAATAATTCAATTTCGACCA AGCTCAATTTAGATCTGAGAAGTTTTCGCAGAAACAGATTAAGGCAGACACCTGAAGTTACTGTCACATCTAAGAACAGAATCCATGGAACGAATACTTG CATCAACCGAGTGCCTGAAAGCTCTAACAGTAGGCTTGGAGATTCAGGAATCATTTCAGGCAATGTGATGCCACAGCATGTTCAGGAGAATCAGACAACT CAAAACCTTGGCCCTAGCAGCATGTTAGCCTTAAGTGCAAGAAGCTTTGCTCCAGATGGCAATGTTCCAGCACTACCTTTGGTATCCCAGCAACAGAGGT ATCAAATGAGGATTTCCCCAAGAAGTATGCAGGATCAAGGGTCAGGGTCTCCTGCCAACATTTCCGGAGCTGCCGCCTTCGGGCAGGACAAGATGGTTGC TCACTGCACCATGAATTCTGCTGCTCTTCTTGGGAAGAGGGAGAACCAAGATGCACAAATGTCACCTTTATCTAGTTTTAGTAAGAGACCAAGGCTTACA CCAGCAGGTCCTGATGTAATTCAACAGCAGCAAAGGGGTCTGCATATGGATGGCCTCCATGAATCAGAAATGAACCGGAAGAATTCACTACTACAGCAGC AAGCAATGACAAGAGGAATTCAGTATGCCAATGCAGGCATTCAGAAGTACCCACACCAGATGTTAGAAGGGGTTGTACATCAAAATGCTGCAGCAACATC ATTTTCTGCAGGACATCCAGGTATGAGACTTGGTCTCAAGGAAGAACAGTTCGAGACAGAAAAACTGGATGGTTCAGTGCTTAGTCAGGGTAAAAATGAT ATGCAGATGATGGAAACAGAAACAGGCCATTTGGAAACACAGCAACCATGGTTACAGCAAAGATTACCACAACCTGTCATGAGATCTAATTTCCCTCAGG CTGGATGGAACAATCTCAGCCAAGATTGTAGGAAGGAGGAACAGCCCCAGAAAAGGAAACCAGCACAAAGTCCTAGGTTATCTACTGGGGGTTTAGCTCA ATCACCTCTATCATCAAAATCCGGGGAATTGTCTAGTGGTTCAGCTGGACCCCATTTTGGAGCAGCTGCAGCAACTGCTGCACTTGGGTCATCACAAAAG GAGAAGTCAGTGGTTACTGCTGTTGGTGGAACCCCATCTTTGACTTCCAGTGCTAATGATTCCTTGCAAAGGCAGCACCAGGTTCAAGTTGCTGCAAAAC GGAGATTGAATTCCCTTCCTAAAACCCTGGTAATGAGCAACGTGGGGTCTCCTGCAAGTGTCAGCAATACAAGCATTCCGTTAAATGCAAATAGTCCTTC AATTGGGACCCCACCTATGGCTGATCAAAGCATGCTTGAAAGATTTGCAAAGATTGAGATGGTGACCATGAGGCATCAACTCAACTGCAAAAAGAATAAA GTTGATGATTACCCTATCAGGAAACCAAAGACCTATTCACTTCAAAATCTGTCTTTTCATCTCTCCAATTCAACCAGTAATGAGGAGTTCAAAGATGATA CTAATGCAAGGCAGTTATCAAAGTCTCTTGTAGGTGGAAATATGAATATCTGCAAGACAAGATTTATGGATTTCATAATAACAGAACGAGTGCTTCAAGC AGGGAATGTTGTTTCTTATGTTCAAAGGGTACGGAATAGAATGATTATGTCAGAAAAGCCAAATGATGGTACTGTGGTGATGCATTATGGAGAAGCAGAT GAGTTTGATGTTCTATCTGCAGAAGATTATCTTCCTACGTTGCCCAATACTCATTTTGCGGATTTGCTTGCAACACAATTGTTTTCACTGATGATGCGTG AAGGATATATTGTGGAAGATCATATTCAACCAAGACCTATCTGCACTAATATTGCTTCAAGCAATCAACCAAATGTTTCTGGAGGCCCTCATAATAATTC ACCAATTGAGGTGAAGCAATACAATGAAGCAGTTCCAGTTCAGCCATGCAATGATCTAAAGCCAACTCTTGGCGGTAATGCATCCATTAATTCTTCCCAC AATCTACTAGCAAATACAAGGATGCTACCTCCTGGAAATCCTCAGAGTCTTGTGTCTGGAGTATCAGTGCCTGCAAGACCACAACAGCTAGACCCACAGC ACTCTCTTCTGCAGCAGCAGCAAAATCAACATGCTTTAATGCATCAACAAAATTCTCAATTTCAGAGGTCACAAATGGTGCTTCCATCAAATTCACTCTC TCATTTAGGTGCAATTGGACCGAATTCAAACATGCAGTTGGGTGGTCACTTGGTAAACAAGTCTTCTCTTCAGCTCCAGCTGTTACAACAGCAGCATCAA CAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAACAGCAGCAGCAACAACAGCAGCAGCAGCAGCAGCAGTCACAGCAGCTGCAGT CACAGCAGCTGCAGCAGCAGCAGTCACAGCAGCAGTCACAGCAGCTGCAGCCACAACAACAGCAGCAGCAGCTGCCACAGATGCAGCAGAGGAAAATGAT GATGGGACTTGGAAGAGCTATGGGTATGGGAAACATGGTTGGCCTAGGAGGTCTGGGCAATGCTGCGGGCATTGGAGGTGCAAGGGGAATGGGACCAGGA ATCTCTGGACCTATGGCTCCTATAACTGGCATGAGTAATGTTGGCCAGACTCCGATGAATCTGGGTCAGACTGCAAATATCAACACAATAAGTCAGCAAC TTCGTGGTGGACACATGACTCCTGCAGCTGCTCTGATGATAAAACAAAGAATGAGCCCAGCAAGCATGATAGGGGGCCCTCAGTCTGGTATAGCCGGGAT GTCAGGAGCCAGACAGATGCACTCGGGCTCTGCTGGTTTTTCCCTGCTGAGTCAATCTCTTAACCGAGCCAACATGAATCTAATGCAACGAAGTCCAATG GGGCCTATGGGTCCACCAAAGTTGATGACTGGGATGAATCCCTACATGAACCAGCAACAGCAACTGGAATTACATAAACAGCAGCAGCAACAGCAGTTAC AGCAGCAGCAGCAACAGCAGTTACAGCAGCAGCAGCAGCAACAGCAGTTTCAGCAGCAGCAGCAGCAGCAGCAACAACAGCAGTTTCAGCAGCAGCAGCA GCAGCAACAACAGTTACAGCAGCAGCAGCAGCAGCAGCAGCAACAGTTACAGCAGCAACATCAACATCAACAGCTGCTACTGCAGCAGCATCAGCAGCTG CAGCAAGAAACAACTTCAACTTCTTCATCGCTACAGTCTGTTGTTTCACCTTTACAAATAGGGTCACCGTCAACCATGGGAATTCCACAACTGAACCATC AAACCCAACAACAGCAACCCCAGCAACAGCCCAGCCCGCAGCAAATGAGCCAACGAACCCCAATGAGCCCACAGTTGAGTTCAGGAGCAATCCATGCCAT CAGTGCTGGGAATCCAGAGGGTTGCCCCGCTAGTCCACAGTTGAGCTCTCAAACCCTTGGTTCTGTTGGAAGCTTCACAAATTCTCCAATGGAGCTCCAA ACTGTGAACAAAAGCAACCCTGTTAGCAATGCATAA
AA sequence Show only first row Show all	>Potri.003G069200.5 pacid=42787118 polypeptide=Potri.003G069200.5.p locus=Potri.003G069200 ID=Potri.003G069200.5.v4.1 annot-version=v4.1 MGVSFKVSKTGTRFRSKPFVQSDTVLDEVSENSEESSVIGSKNESSTRKGEADIFEGAEDALAVSSLSFSGQEVSLTLNLYPDGYSIGKPSEIEAAHQAP LQDGQKLLHPYDKTSETLFSAIESGRLPGDILDDIPCKYVNGTLVCEVRDYRKCASKQGSSVPFMDGLPIVNKVCLRMSLENVVKDIPLISDNSWTYGDL MEVESRILKALQPQLCLDPTPKLDRLCNNSISTKLNLDLRSFRRNRLRQTPEVTVTSKNRIHGTNTCINRVPESSNSRLGDSGIISGNVMPQHVQENQTT QNLGPSSMLALSARSFAPDGNVPALPLVSQQQRYQMRISPRSMQDQGSGSPANISGAAAFGQDKMVAHCTMNSAALLGKRENQDAQMSPLSSFSKRPRLT PAGPDVIQQQQRGLHMDGLHESEMNRKNSLLQQQAMTRGIQYANAGIQKYPHQMLEGVVHQNAAATSFSAGHPGMRLGLKEEQFETEKLDGSVLSQGKND MQMMETETGHLETQQPWLQQRLPQPVMRSNFPQAGWNNLSQDCRKEEQPQKRKPAQSPRLSTGGLAQSPLSSKSGELSSGSAGPHFGAAAATAALGSSQK EKSVVTAVGGTPSLTSSANDSLQRQHQVQVAAKRRLNSLPKTLVMSNVGSPASVSNTSIPLNANSPSIGTPPMADQSMLERFAKIEMVTMRHQLNCKKNK VDDYPIRKPKTYSLQNLSFHLSNSTSNEEFKDDTNARQLSKSLVGGNMNICKTRFMDFIITERVLQAGNVVSYVQRVRNRMIMSEKPNDGTVVMHYGEAD EFDVLSAEDYLPTLPNTHFADLLATQLFSLMMREGYIVEDHIQPRPICTNIASSNQPNVSGGPHNNSPIEVKQYNEAVPVQPCNDLKPTLGGNASINSSH NLLANTRMLPPGNPQSLVSGVSVPARPQQLDPQHSLLQQQQNQHALMHQQNSQFQRSQMVLPSNSLSHLGAIGPNSNMQLGGHLVNKSSLQLQLLQQQHQ QQQQQQQQQQQQQQQQQQQQQQQQQQQQSQQLQSQQLQQQQSQQQSQQLQPQQQQQQLPQMQQRKMMMGLGRAMGMGNMVGLGGLGNAAGIGGARGMGPG ISGPMAPITGMSNVGQTPMNLGQTANINTISQQLRGGHMTPAAALMIKQRMSPASMIGGPQSGIAGMSGARQMHSGSAGFSLLSQSLNRANMNLMQRSPM GPMGPPKLMTGMNPYMNQQQQLELHKQQQQQQLQQQQQQQLQQQQQQQQFQQQQQQQQQQQFQQQQQQQQQLQQQQQQQQQQLQQQHQHQQLLLQQHQQL QQETTSTSSSLQSVVSPLQIGSPSTMGIPQLNHQTQQQQPQQQPSPQQMSQRTPMSPQLSSGAIHAISAGNPEGCPASPQLSSQTLGSVGSFTNSPMELQ TVNKSNPVSNA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72390			unknown protein		Potri.003G069200 [exp]	0	1
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Potri.007G071600 [exp]	2.00	0.9025
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Potri.005G129800 [exp]	3.74	0.8858
AT5G20930		TSL	TOUSLED, Protein kinase superf...		Potri.009G155400 [exp]	4.12	0.8477
AT3G61690			nucleotidyltransferases (.1)		Potri.012G000900 [exp]	4.47	0.8805
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Potri.011G094100 [exp]	4.58	0.8816
AT3G63400			Cyclophilin-like peptidyl-prol...		Potri.002G047200 [exp]	5.19	0.8386
AT4G11270			Transducin/WD40 repeat-like su...		Potri.003G132900 [exp]	5.29	0.8605
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Potri.008G047700 [exp]	7.41	0.8682
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Potri.001G359700 [exp]	7.74	0.8515	TOP1.1
					Potri.009G069751 [exp]	8.36	0.8047

Compare expression of checked genes

Potri.003G069200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.