Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14130 518 / 0 Aldolase-type TIM barrel family protein (.1) AT3G14150 515 / 0 Aldolase-type TIM barrel family protein (.1.2) AT4G18360 422 / 6e-148 Aldolase-type TIM barrel family protein (.1.2) AT3G14420 410 / 3e-143 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) AT3G14415 402 / 6e-140 Aldolase-type TIM barrel family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G069600 [exp] 655 / 0 AT3G14130 502 / 2e-179 Aldolase-type TIM barrel family protein (.1) Potri.003G069400 [exp] 646 / 0 AT3G14130 529 / 0.0 Aldolase-type TIM barrel family protein (.1) Potri.004G065200 [exp] 419 / 8e-147 AT3G14420 651 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Potri.001G394400 [exp] 404 / 1e-140 AT3G14420 668 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Potri.011G112700 [exp] 400 / 5e-139 AT3G14420 669 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013171 [exp] 509 / 0 AT3G14130 521 / 0.0 Aldolase-type TIM barrel family protein (.1) Lus10008133 [exp] 506 / 0 AT3G14130 518 / 0.0 Aldolase-type TIM barrel family protein (.1) Lus10038507 [exp] 422 / 9e-148 AT4G18360 665 / 0.0 Aldolase-type TIM barrel family protein (.1.2) Lus10023302 [exp] 412 / 6e-144 AT4G18360 664 / 0.0 Aldolase-type TIM barrel family protein (.1.2) Lus10013725 [exp] 402 / 7e-140 AT3G14420 675 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Lus10005590 [exp] 401 / 2e-139 AT3G14420 675 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Lus10038144 [exp] 281 / 1e-93 AT4G18360 435 / 4e-154 Aldolase-type TIM barrel family protein (.1.2) Lus10042495 [exp] 279 / 8e-93 AT4G18360 461 / 1e-164 Aldolase-type TIM barrel family protein (.1.2) Lus10013173 [exp] 233 / 3e-76 AT3G14130 246 / 7e-82 Aldolase-type TIM barrel family protein (.1) Lus10013174 [exp] 145 / 1e-42 AT3G14150 142 / 3e-42 Aldolase-type TIM barrel family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [poplar] [flax] TIM_barrel PF01070 [poplar] [flax] FMN_dh FMN-dependent dehydrogenase
Representative CDS sequence Show only first row Show all	>Potri.003G069300.1 pacid=42786724 polypeptide=Potri.003G069300.1.p locus=Potri.003G069300 ID=Potri.003G069300.1.v4.1 annot-version=v4.1 ATGGCAGATGAAATAGTTAATGTGAACGAGTTCCAAGTATTGGCTAGGCAAGCCCTTCCAAAAATGTACTATGACTTCTATGCTGGAGGAGCAGAGGATG AGCACACATTAAAGAAGAATGTGCAAGAATTTCAGAGAATCATATTGCTGCCTAGAGTTCTTGTGGATGTGAGCAGCATAGCTTTGTCTACTAATATATT GGGCTACACTATCTCGGCGCCGATTATGATAGCCCCAACTTCTATGCATAAGCTAGCACATCCTGAAGGAGAGCTTGCCACTGCCAGAGCAGCAGCTGCA TGTAATACTATAATGATGTTATCCTTCACAGCTTCCTGCAGCGTGGAGGAGGTTGCTGCCAGCTGCGATGCTGTTCGATTCTTTCAATTATACGTATGCA AAAGACGAGATATAGCTGTTAACCTTGTGCAGAGAGCTGAAAAGAGTGGATATAAGGCTATCGTCCTAACAGCTGATCGTCCAAGACGTGGTCGAAAGGA GGCAGACATAAAGAATAAGATGATTTTGCCCCAGCTGAAGAATTTGGAAGGTCTAATGTCAATTGAAGTATTCTCTGATAAAGGTTCGAACATAAAACCT AACACCAATGAAATCTTCGATCCTTCTTTGTGTTGGAGGGATATAGCATGGCTAAAATCCATTACAAGCTTGCCTATTCTGATCAAGGGAATACTCACTC GCGAGGATGCCATTAAGGCCATGGAAGTAGGTGCTGCTGGAATTATCGTCTCCAATCATGGAGCTCGTCAGCTTGATTATACTCCAGCCACAATCTCAGT TCTGGAAGAGGTGGTTCAAGCCGTAGGAAGGAGAGTTCCTGTTCTCCTTGATGGAGGAGTACGGCGAGGAACAGATGTTTTCAAGGCGCTGGCCCTTGGT GCACAAGCAGTTCTTGTTGGGAGGCCAGTTATTTATGGGCTAGCAGCAAAGGGAGAAGCAGGGGTGAGAAAGGTGATGCAAATGCTGAAGGACGAGCTTG AGCTCACCATGGCCCTCGCAGGCTGCCCTAGTGTGGAAGACATTAGCAGGAGCCATGTAAGGACTGACCGCGACAGGCTCCAATCAATGCTCTAA
AA sequence Show only first row Show all	>Potri.003G069300.1 pacid=42786724 polypeptide=Potri.003G069300.1.p locus=Potri.003G069300 ID=Potri.003G069300.1.v4.1 annot-version=v4.1 MADEIVNVNEFQVLARQALPKMYYDFYAGGAEDEHTLKKNVQEFQRIILLPRVLVDVSSIALSTNILGYTISAPIMIAPTSMHKLAHPEGELATARAAAA CNTIMMLSFTASCSVEEVAASCDAVRFFQLYVCKRRDIAVNLVQRAEKSGYKAIVLTADRPRRGRKEADIKNKMILPQLKNLEGLMSIEVFSDKGSNIKP NTNEIFDPSLCWRDIAWLKSITSLPILIKGILTREDAIKAMEVGAAGIIVSNHGARQLDYTPATISVLEEVVQAVGRRVPVLLDGGVRRGTDVFKALALG AQAVLVGRPVIYGLAAKGEAGVRKVMQMLKDELELTMALAGCPSVEDISRSHVRTDRDRLQSML

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14130			Aldolase-type TIM barrel famil...		Potri.003G069300 [exp]	0	1
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Potri.013G041600 [exp]	2.23	0.8599	Pt-PR4.1
AT4G39070	CO		B-box zinc finger family prote...		Potri.009G122000 [exp]	3.46	0.8295
					Potri.004G067750 [exp]	3.87	0.8101
AT4G36600			Late embryogenesis abundant (L...		Potri.007G024000 [exp]	4.58	0.8155
					Potri.006G037801 [exp]	8.00	0.8104
AT4G36600			Late embryogenesis abundant (L...		Potri.005G122400 [exp]	9.79	0.7769
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Potri.002G032400 [exp]	10.67	0.8089
AT1G67030	C2H2ZnF	ZFP6	zinc finger protein 6 (.1)		Potri.014G123700 [exp]	10.95	0.7356
AT1G66180			Eukaryotic aspartyl protease f...		Potri.004G085000 [exp]	10.95	0.7671
AT5G26594		ARR24	response regulator 24 (.1)		Potri.002G253000 [exp]	11.66	0.7946

Compare expression of checked genes

Potri.003G069300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.