Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66840 207 / 3e-60 SAP domain-containing protein (.1) AT3G08505 44 / 0.0001 C3HZnF zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.1), zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.2) AT1G16970 43 / 0.0004 KU70, ATKU70 ARABIDOPSIS THALIANA KU70 HOMOLOG, KU70 homolog (.1) AT1G29560 42 / 0.0008 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT3G47120 42 / 0.001 C3HZnF RNA recognition motif (RRM)-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G136000 [exp] 209 / 9e-63 AT5G66840 231 / 2e-70 SAP domain-containing protein (.1) Potri.004G134400 [exp] 54 / 2e-07 AT3G08505 326 / 2e-110 zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.1), zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.2) Potri.006G148400 [exp] 47 / 4e-05 AT5G56930 156 / 3e-39 embryo defective 1789, CCCH-type zinc finger family protein (.1) Potri.009G062600 [exp] 45 / 5e-05 AT3G08505 452 / 3e-160 zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.1), zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.2) Potri.001G268200 [exp] 45 / 7e-05 AT3G08505 462 / 3e-164 zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.1), zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.2) Potri.003G061600 [exp] 44 / 0.0002 AT3G19360 109 / 1e-27 Zinc finger (CCCH-type) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008134 [exp] 162 / 1e-45 AT5G66840 127 / 1e-32 SAP domain-containing protein (.1) Lus10013172 [exp] 58 / 3e-09 ND 46 / 1e-05
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [poplar] [flax] CCCH_zf PF00642 [poplar] [flax] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar) CL0306 [poplar] [flax] HeH PF02037 [poplar] [flax] SAP SAP domain
Representative CDS sequence Show only first row Show all	>Potri.003G069700.2 pacid=42785354 polypeptide=Potri.003G069700.2.p locus=Potri.003G069700 ID=Potri.003G069700.2.v4.1 annot-version=v4.1 ATGGTAACCTATAAACAAAAAAAACCCCAAGATGAACAAGAAGAAGAAGTTTATAGTACTGAAAGTGGAGGGTCCGACCCGGATTATGATTCTGATACTG ATCCAAGTTACAGCATTATTGAAGAGACTCGAAGCAATCTCTCAAGATTGTCTATCAAGAAGAAATCAAAGTCACGCGTTGCAAAGGATCTGGACCTGAG CTTTGATAAAGACCCAGGAGAAAAAGAGACGAAATTGGCAGAAGTAGATGAGAAAAGTTATGAGGAAGTTCAAAAGATCATACAAGCTGGGAAGTTAGAG GGGCTCAAAGTGGAGCAATGTAAGGTCTATTTGAGGAAGAATAAATTGAGACTGACTGGCAAAAAGGACACACTCATCCAGCGCATAAAGGAGCATCAAG AGATTTTGAGTGGCGGAGGGGAGAAAAAGTACCCCATATCTAGCTTTGTTTTGGACTGTAAAGGGGATGCATGCAGAGGTGACATTGTCATGTTTGACCA GAATGTTTACGATAAGTATAATATAGCATCACGAAGTGCCATGGGTCCTCCTATCGGAACAAGGATGGTTGCAGGTAAAATTGTGCAGGAAAGCTATGGT GCTGCCAAGCAACAGCATACATTTACAATAGAAGTCCTTTGGAGCAAAGGGGAGAATCCACTCCCTCCACTTCATCCCCTCCTGATAAAGGGTCGGAACC TGTATCGAATGAAGACCTTAAGACAGAGATGGGAAGATGAAGGAGAAAGGCGCAAGATTCTTCTCGAAAAGCACTTAAGAGGTTCTCTCGCCAGGTCTAG CAGAGAAACCAGGATCCAGGAGAAGGAAGGGAGGAAAATGCTCAGGGTGGAAAGGGCCTTGAAAAAGGAAGAGACAAACAAGAGTCGCTCTCATTTAAAT CCCCGCACAAGTTTAACCAATGGGTTGTCAAGGATGGATCAGAGACAACCCTTGAAATGTGCTGACAGCTATCGTCCAATGGGATCACCACACAGACAAG GCTGCGAACAACCTAAACTTCATGCAAACCGAGGGGAAAATGATTACCGCGGTCAAGTTCCTGGAAACTCAGTCGAGTACAGTGACATCCAGGATGATTT TTGTTCAAGGTCTCCCAACTTCTGTAGAAAGCCACTGGCAATCATTCATAACTCTAGTCCAATTAGATCACCACATAGACAAGGCGGCGACCAACAGATA CAGCTATGCAGATACTTTGCTCAAGGAAGATGTCATTACGGTCACAATTGCAAATTTGTGCATGAATCAAGGGAGGGACAACTATGCAGATACTTTGCTC AAGGAAGATGTTATTACGGTCACGATTGCAAATTTGTGCATGAATCAAGGGAGGGACGTGAGCAGAGGAGAGAGGAGAGTGGTGGGCCTTGTAGCCCAAG GAGAGAGGAGTGGCCTACCAACCCAAGAAGGCTGGAACGAAGACCATACTTGTTCTGA
AA sequence Show only first row Show all	>Potri.003G069700.2 pacid=42785354 polypeptide=Potri.003G069700.2.p locus=Potri.003G069700 ID=Potri.003G069700.2.v4.1 annot-version=v4.1 MVTYKQKKPQDEQEEEVYSTESGGSDPDYDSDTDPSYSIIEETRSNLSRLSIKKKSKSRVAKDLDLSFDKDPGEKETKLAEVDEKSYEEVQKIIQAGKLE GLKVEQCKVYLRKNKLRLTGKKDTLIQRIKEHQEILSGGGEKKYPISSFVLDCKGDACRGDIVMFDQNVYDKYNIASRSAMGPPIGTRMVAGKIVQESYG AAKQQHTFTIEVLWSKGENPLPPLHPLLIKGRNLYRMKTLRQRWEDEGERRKILLEKHLRGSLARSSRETRIQEKEGRKMLRVERALKKEETNKSRSHLN PRTSLTNGLSRMDQRQPLKCADSYRPMGSPHRQGCEQPKLHANRGENDYRGQVPGNSVEYSDIQDDFCSRSPNFCRKPLAIIHNSSPIRSPHRQGGDQQI QLCRYFAQGRCHYGHNCKFVHESREGQLCRYFAQGRCYYGHDCKFVHESREGREQRREESGGPCSPRREEWPTNPRRLERRPYLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66840			SAP domain-containing protein ...		Potri.003G069700 [exp]	0	1
AT1G18090			5'-3' exonuclease family prote...		Potri.015G041400 [exp]	1.73	0.9452
AT3G09080			Transducin/WD40 repeat-like su...		Potri.006G096400 [exp]	2.44	0.9347
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Potri.019G021800 [exp]	4.47	0.9390	Pt-CDC20.3
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Potri.019G129740 [exp]	4.47	0.9353
AT1G50240		FU	FUSED, Protein kinase family p...		Potri.019G052500 [exp]	5.47	0.9353
AT5G05240			Uncharacterised conserved prot...		Potri.013G091100 [exp]	6.92	0.9100
AT4G14770	CPP	ATTCX2	TESMIN/TSO1-like CXC 2 (.1)		Potri.018G030000 [exp]	8.66	0.9029
AT1G08560		KN, ATSYP111, S...	KNOLLE, syntaxin of plants 11...		Potri.019G030800 [exp]	10.19	0.8821	SYP111.2
AT1G18370		HIK, ATNACK1	HINKEL, ARABIDOPSIS NPK1-ACTIV...		Potri.012G054400 [exp]	11.22	0.9380
AT1G20060			ATP binding microtubule motor ...		Potri.013G068501 [exp]	12.72	0.9087

Compare expression of checked genes

Potri.003G069700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.