Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14170 459 / 1e-157 Plant protein of unknown function (DUF936) (.1) AT1G08760 176 / 1e-47 Plant protein of unknown function (DUF936) (.1) AT4G13370 167 / 2e-44 Plant protein of unknown function (DUF936) (.1) AT1G23790 145 / 2e-37 Plant protein of unknown function (DUF936) (.1) AT1G70340 138 / 4e-35 Plant protein of unknown function (DUF936) (.1) AT3G19610 129 / 1e-31 Plant protein of unknown function (DUF936) (.1) AT2G31920 110 / 1e-25 Plant protein of unknown function (DUF936) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G026200 [exp] 175 / 4e-47 AT1G08760 719 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.018G072500 [exp] 173 / 2e-46 AT4G13370 719 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.007G131600 [exp] 167 / 2e-44 AT1G08760 674 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.008G192300 [exp] 147 / 9e-38 AT1G23790 572 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.009G024800 [exp] 145 / 4e-37 AT2G31920 293 / 1e-91 Plant protein of unknown function (DUF936) (.1) Potri.001G294600 [exp] 137 / 2e-34 AT3G19610 177 / 2e-47 Plant protein of unknown function (DUF936) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013177 [exp] 576 / 0 AT3G14170 459 / 9e-158 Plant protein of unknown function (DUF936) (.1) Lus10008138 [exp] 457 / 3e-158 AT3G14170 350 / 8e-117 Plant protein of unknown function (DUF936) (.1) Lus10036076 [exp] 176 / 7e-47 AT1G08760 731 / 0.0 Plant protein of unknown function (DUF936) (.1) Lus10026806 [exp] 172 / 5e-46 AT1G08760 732 / 0.0 Plant protein of unknown function (DUF936) (.1) Lus10043255 [exp] 169 / 4e-45 AT4G13370 652 / 0.0 Plant protein of unknown function (DUF936) (.1) Lus10019398 [exp] 165 / 1e-43 AT4G13370 646 / 0.0 Plant protein of unknown function (DUF936) (.1) Lus10013007 [exp] 144 / 2e-39 AT1G23790 253 / 6e-82 Plant protein of unknown function (DUF936) (.1) Lus10030619 [exp] 145 / 2e-37 AT1G23790 393 / 5e-132 Plant protein of unknown function (DUF936) (.1) Lus10029158 [exp] 145 / 3e-37 AT1G70340 477 / 2e-164 Plant protein of unknown function (DUF936) (.1) Lus10002129 [exp] 142 / 6e-36 AT3G19610 260 / 9e-77 Plant protein of unknown function (DUF936) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06075 [poplar] [flax] DUF936 Plant protein of unknown function (DUF936)
Representative CDS sequence Show only first row Show all	>Potri.003G070200.1 pacid=42785660 polypeptide=Potri.003G070200.1.p locus=Potri.003G070200 ID=Potri.003G070200.1.v4.1 annot-version=v4.1 ATGGCATCTCTTACACCAGGAGTACTGCTTAAGCTTCTTCGGAGTATAAACTCGAATGTAAGGGTTCGAGGAGAATATCGGTCTGTTCTCCTGCAAGTTA TCAGCATTGTGCCAGCCCTGTCAGGCTCAGAACTATGGCCTAATCAGGGTTTCTTCATAAAAGTATCCGATTCCTCACATTCTACCTATGTCTCATTGTC GAAGGAAGACAATGAGCTAATTTTGAATAACAAGTTACAACTTGGGCAGTTTTTCTATGTTGATAGAGTGGAAGCTGGGACCCCAGTTCCGACTTTAAGT GGTGTTAGACCAGTGGCAGGGAGAAATCCTTTCATTGGGAATCCGAAAGATCTGATGCAAATGTTGGTTCCATCTGAGGGTCCAGTGCCAGTTAATGATG GAGTTAATAGTTCAAAACCGAGGGAGTTATCAGAAGTGAAAGGGGAGAATGCAAGGCAGAAAATTGTTATCAAAGAGGAAAAGGCTGGAGTTGCATCTAG GTATATGCAGGGTGTTTTGACAGGAAGTCTTAAAGTTGGTGAAGTGGATTCAAGTGGAATTGGGAAGAGCAATGAGAGTGATAATAGTGGACCAGGTAAG AAGGTTGGATTAATGAATGGCAAGCAGCAAGAAAATAAAGGTCAGGCACGCCCGGCCACTCCTTATCAAAATCAACCTGATGCGCTTTCATCAAAGCCAG ACGTCGCCGTATCCAGCAACAAAGAATTTCCAGCGTCTTCCAAGAGAACTTCTGCAAAACGGTTATCAAATAAACAAGACGATACAAACTTCAATTCTTT GTCAAGTAATAACAATAAAATCCCTTTTCCTGAGGCAACATCATGGACCTCTTTGCCTTCAAACCTCATGAAGCCTGGAAAGGGAATGCTTCGAAGGAGA TATTTAGCTACCTTGGTTGCAGCTGAGGCTCAAAAGGAGGCATCCACTGCTGCATCTCTAATCAAGTGCCTCAATATGTTTGCTGAGCTCTGCGCCTCTG CCTCACCAGAGAACCCCCACCTCACTCTCACCAAGTTCTTTACACTCCAACAACTCATCGACCAACCAAATGTAACAGCCCCATTGAAGGATAAATCGCT TCAGTCATTTACTCACTTTTCTTCTCCAGAGACCCAAAAAACAAGCAAAAAGACTAGTCTAAGTAAGGCCAAAGCTACATTGAAGTCTCCAAAGCCTTCA ATGGAGTTAAGTGCAACTGAGAAGCAGGAGTGGGCTAAAGGAGACGGTAAAAAAGAGATTAAAGAACTCCAACAGACTCTTTTGAATGAAACAAGGGCTT GGTTTTTGAGATTCTTGGAGGGAGCATTGGATGCTGGGTTTCATGTTGCAGCCCAGGAGAAGAAAGGTAAGGACTTCGCCACACAACGAATGGAACCGGA GAACAACCATATTGCTGTTGCATTGTCACAGCTTAAGCATGCTAATGAGTGGTTAGATATACTAAGAAGCAAATTGAGCTCTGAAGACAATAATGAATTA GTTGAGACTGTTGATCGGTTGAAGCAAAAGATTTATGCTTGTCTGCTTGCTCATGTGGATTCAGCTGCATCAGCTCTAGAGAATCGATCTAATCGTGGTT GA
AA sequence Show only first row Show all	>Potri.003G070200.1 pacid=42785660 polypeptide=Potri.003G070200.1.p locus=Potri.003G070200 ID=Potri.003G070200.1.v4.1 annot-version=v4.1 MASLTPGVLLKLLRSINSNVRVRGEYRSVLLQVISIVPALSGSELWPNQGFFIKVSDSSHSTYVSLSKEDNELILNNKLQLGQFFYVDRVEAGTPVPTLS GVRPVAGRNPFIGNPKDLMQMLVPSEGPVPVNDGVNSSKPRELSEVKGENARQKIVIKEEKAGVASRYMQGVLTGSLKVGEVDSSGIGKSNESDNSGPGK KVGLMNGKQQENKGQARPATPYQNQPDALSSKPDVAVSSNKEFPASSKRTSAKRLSNKQDDTNFNSLSSNNNKIPFPEATSWTSLPSNLMKPGKGMLRRR YLATLVAAEAQKEASTAASLIKCLNMFAELCASASPENPHLTLTKFFTLQQLIDQPNVTAPLKDKSLQSFTHFSSPETQKTSKKTSLSKAKATLKSPKPS MELSATEKQEWAKGDGKKEIKELQQTLLNETRAWFLRFLEGALDAGFHVAAQEKKGKDFATQRMEPENNHIAVALSQLKHANEWLDILRSKLSSEDNNEL VETVDRLKQKIYACLLAHVDSAASALENRSNRG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14170			Plant protein of unknown funct...		Potri.003G070200 [exp]	0	1
AT5G04840	bZIP		bZIP protein (.1)		Potri.008G018400 [exp]	2.00	0.9365
AT1G07120			unknown protein		Potri.001G279000 [exp]	2.23	0.9306
AT5G17420		ATCESA7, MUR10,...	MURUS 10, IRREGULAR XYLEM 3, C...		Potri.018G103900 [exp]	3.00	0.9434
AT4G31820		MAB4, ENP, NPY1	NAKED PINS IN YUC MUTANTS 1, M...		Potri.018G018600 [exp]	3.87	0.9079
AT5G44030		IRX5, NWS2, CES...	IRREGULAR XYLEM 5, cellulose s...		Potri.002G257900 [exp]	6.92	0.9361
AT1G16860			Ubiquitin-specific protease fa...		Potri.010G252400 [exp]	8.00	0.9331
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Potri.007G135300 [exp]	9.48	0.9280
AT2G40120			Protein kinase superfamily pro...		Potri.008G069000 [exp]	9.94	0.9116
AT1G67510			Leucine-rich repeat protein ki...		Potri.008G176900 [exp]	10.00	0.8993
AT5G66310			ATP binding microtubule motor ...		Potri.007G014800 [exp]	10.19	0.9212

Compare expression of checked genes

Potri.003G070200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.