Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14172 544 / 3e-170 unknown protein AT1G72410 318 / 8e-90 COP1-interacting protein-related (.1.2) AT1G17360 240 / 8e-65 unknown protein AT5G43310 147 / 3e-35 COP1-interacting protein-related (.1.2.3.4) AT4G27430 143 / 3e-34 CIP7 COP1-interacting protein 7 (.1.2) AT1G61100 126 / 3e-29 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G164900 [exp] 2065 / 0 AT3G14172 521 / 1e-161 unknown protein Potri.011G122900 [exp] 157 / 2e-38 AT4G27430 649 / 0.0 COP1-interacting protein 7 (.1.2) Potri.008G168300 [exp] 154 / 2e-37 AT5G43310 891 / 0.0 COP1-interacting protein-related (.1.2.3.4) Potri.010G070200 [exp] 152 / 9e-37 AT5G43310 892 / 0.0 COP1-interacting protein-related (.1.2.3.4) Potri.001G403700 [exp] 152 / 9e-37 AT4G27430 366 / 6e-109 COP1-interacting protein 7 (.1.2) Potri.011G046900 [exp] 150 / 2e-36 AT1G61100 484 / 6e-158 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Potri.004G038300 [exp] 147 / 2e-35 AT1G61100 462 / 1e-149 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Potri.019G064000 [exp] 105 / 2e-22 AT3G14172 99 / 8e-21 unknown protein Potri.013G091900 [exp] 103 / 4e-22 AT3G14172 122 / 7e-28 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013178 [exp] 751 / 0 AT3G28860 889 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10008140 [exp] 744 / 0 AT1G72410 585 / 0.0 COP1-interacting protein-related (.1.2) Lus10032660 [exp] 164 / 1e-40 AT4G21760 525 / 6e-175 beta-glucosidase 47 (.1) Lus10043092 [exp] 156 / 3e-38 AT4G27430 540 / 2e-175 COP1-interacting protein 7 (.1.2) Lus10018471 [exp] 145 / 4e-35 AT1G61100 474 / 1e-155 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Lus10011217 [exp] 141 / 1e-33 AT1G61100 475 / 5e-156 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Lus10021172 [exp] 138 / 1e-32 AT5G43310 834 / 0.0 COP1-interacting protein-related (.1.2.3.4) Lus10011809 [exp] 122 / 9e-28 AT5G43310 839 / 0.0 COP1-interacting protein-related (.1.2.3.4) Lus10000225 [exp] 88 / 3e-18 AT4G21760 189 / 1e-55 beta-glucosidase 47 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G070400.11 pacid=42786359 polypeptide=Potri.003G070400.11.p locus=Potri.003G070400 ID=Potri.003G070400.11.v4.1 annot-version=v4.1 ATGAAATCCAATACACTTCTCGACTATGCTGTATTTGAACTGTCACCAAATCTGACGCGATGTGATCTGTTTGTTTCGAGCAATGGAAACACAGAGAAGC TAGCGTCCGGGTCAGTAAAGCCATTTTTATCTCATTTGAAGTTTGCAGAAGAACAAGCTTCACAGGCAGTTCAGTCAATTAAACTAGAGTTTGACGGATG TAGAAATGCTGAGACTTGGTTCACGAAAGGAACACTTGAGAGGTTTGTGCATTTTGTCAGTGCACCTGAGGTTTTAGAGATGGTCAATACATTTGATGCA GAGATGTCTCAGTTAGAAGCAGCACGGAAAATATATTCTCAGGGTTCTAGAGATCAACTTTCCGGTGCTTTAGGTGGGGATGGAACAGGAACCACAGCAG GAGCTGATGCAACAAAGAAGGAGCTTTTAAGAGCGATTGATGTGAGGCTAGCTGCTGTTAGGGAGGATTTAGCCACAGCCTATGCTCGTGCATCAGCTAC TGGATTCAACCTTGACACTGTTCGAGACCTCCAGCACTTTGCAGATCGCTTTGGTGCTCGTCGCTTGAATGAGGCTTGTACCAAATTTATGCTACTGTGC CTCAGAAGACCAGACCTGATCAATCCATGGAAGCCAAGTGTGGAGGATCAAGTGGTCCGATCCTCGTGGGGATCTGACATGTCAATTGATGACCCCACTG AAGATGAAAGTGGGTCCTACATGAACAGGCCCCACCAAAACCCATTCCAAAATAAACACCAACAGCAGCAAGCTGGAAAAGAAATACAACAGCTAGATAA GACACAAACCCAACACCCTGATCAATCCAAGCCCACCACTTGTCAACAGCCCGATTCCTCTCGGGCTGCACAGCAACAAACTTTTCAAAACGAGAAAAAG GAAGAAGAAAAGAAGAAAGAGGAGGCTGGGAATGAGTCATCAACAAGTCAACCAAGCCACCCTTCTAGGAGACTCAGTGTTCAGGACAGAATCAACCTAT TTGAGAATAAGCAGAAGGAGAGCTCAGGTGAAAAACCTGTAGCTGTGGGGAAATCTGCAGAGCTGAGGAGACTATCATCTGACGTGTCGTCAGCATCTGC AATTGAAAAGGCTGTATTGAAGAGATGGAGTGGTGCAAGTGATATGAGCATTGACTTGGGCAATGATAAGAAGGACGATGGCAATATAGACAGCCCCTTG TGTACACCCTCTTCATCCTTTGTATCTGGAACCAAAAGTAATGTGTTTCCTGTCTCATCAGATGATGATAAGGACCAGAAGGGTTTTAATGATACAGCAA GTGCAGCAAATCTAGTAAAGTTGGAAACTAGGAGTGTTTCTAGGTTGAAAGATCAGGGTGAGTTGCAAACTCATGGTGGTGGAATTGTGGGGAAGGATGA GGAGGTGAATTTGAAGGGGAATTTGAAAGATCAAGTAGTGTCTCTGGCTGAGTTAAGGTCATCTGCAGGTAGAGGAGAGGAGACTGGGGTGGGTGATCAG GTGGTTAGGGAGGATAAGTTGACGGGTACTTCGGACAGGGAAGAGAAGACTGGTGGAGTTGAAGCTCAACTGAGTTTTCAGGAGAAGTCGAGAGGTTTTC CAAATACGGTGAAGACTGTTGCAGAGAAAAACCAGGCTAGTCTGCAGACCCAGATTGGAAATTTTGCAGGCAGGGTTGGGGATGTGAAATTTGGGAACAG AATTGATGACATTGAAGTAAGGGATCCGCCACTAAGTCAGTCAAGGTCTAGGATTTCTCAGACACATACTCTATCTCTTTCAGGACAGTTTGAAGGTGGT TTTGGAGTAAAGGGTAAGGAATTGCCAACTAAAGGGACTGACTTTGATCTGTCAGCTTCTCAGACACCGTGGAAATTGTTTAAGGGCGAAGTTGATCATG CAAGGAAGGAGAATACTGAACAGATAAAAGAGGAAGATCTTGAAGTTTCAAGAATGAAGGTCCACAAACAACCTTCTTCTGGTACAGAACAATTTAAGAA GCTTCAGGGTAGGAGGGATGAGAGTAGGGATGAGAGTGGTTATATTCATGGAATTAACAAGCTGAGTTTTCCTGGTAATAAGTTTTCTAAGAGTCAAGAG AGCGTTGTAACTCTGCAAGTACCATCAGCAGGTCAGGCTCAGAGGGTACGGAAGTCCAAGGGGAATCAAGAGCTGAATGATGAGCTGAAGATGAAGGCAA ATGAGCTTGAAAAGCTTTTTGCTGAACACAAACTTCGGGTTCCTGGTGATCAATCCAGTTCTGTTCGGAGAAGCAAGCCTGCTGAGGTGCAAGCTGAACA GGCAGAAAGTTCGCAGTACCGAAAACCAGTGGCAGTAGAGATATCTCCTGTTGAGTTTCAGGAAAAGAAGACAGTGCTTGAACCAGCTGGGAGTTCTAGT GATCTTGGAAAGTTTAGCACTCCACCAAGGAAGATAGTAGATCATCAGGACCATGGCAGTTCTCCCAGGCAGAGTTTCTCTGAGCTTAGTTTTTCAGACA ATTCTAGAGGAAAATTCTATGAGAGGTACATGCAGAAAAGAGATGCAAAACTGAGGGAGGAGTCGGGTACAGAAAGAGTGGAGAAGGAAGCCAAGTTGAA GGCCATGCAGGAAAGCCTTGAACAGAGTAGAGCTGAGATGAAGGCAAGATTTTCTAGCTCTGTGGACAGACAAAATTCATTGTCTAGTACTCGCCGACGT GCAGAAAAGCTCAGATCATTCAATTTTCATTCAAGTGTGAAGAGAGAACAGCCAGTAGATTCCATTCAGAGTGAGGCGGACGAGGATCTTTCTGAATTTC CAGAACAGAATTATTATGGAGAAGACAGGTCATTCAGTGAGGTGTCTTATGGGGACATTGCTTCTAGAAGATCTCAAAACAAATTCTTCCCAAACAGATA TTTGTCTTCTCCCAGCCCTCACACCACATCAGCACCAGTTCCACGGTCAGTGTCCAAAATTTCCAATCCAAGTTCTGGGAGGCGTAGAGTACAATCAGAA AATCCTCTTGCACAGTCTGTTCCGAACTTCTCTGATTTCAGAAAAGAGAATACAAAACCCTTTTCTGGAGTTAGCAAAGCAGCAAATCGCTCGCAGGTGA GAACCTATGCCTGCAGCAAGAGTTCCAGTGAAGAGATACCTCTTGTCAATGAAGAAAAGAACCGGCGGTCTCAGTCCTTGCGGAAAAGCTCTGCTGGTCC TATTGAGTTTAATGATTTTCCCCCATTGAACTCAGATGGTGTTGTGTTAGCACCGTTGAAATTTGATCAGCCTGAGCCGATGCCATATGACAAGTTCTCA AAGAATGTGGAGACAAAGCCTTTCCTCAGGAAGTGTAATGGAATAGGTCCTGGTTCTGGAGCCACTGTTGCTACACTGAAAGGTATGGTGGCACCTGAGT CTTTGAAAACTGAAGAATTTGAAGAATCACCCTTTGAGGCAGAAGAATCAGTCGATGAGGCAAAGGAGGAAGAAGACGAGGAGCTTGAAACAACAGAGGT TGAAGGTTGTGCTAATATGGACAATGGTAAACTAAGACTAAGCCAGGATTCAGACAAGATAGGTATGTCTGGATCTGAGAATGGTGATTCTCTGAGATCT ATTTCTCAAATCGATCCTTCTTCAGTTTCTGAATTGGCTGCATCCGTGCCTTCAACATTCCATGCTTTAGGGTCTCTACAGGACTCGCCTGGGGAAAGCC CTGTGTCATGGAACTCGCGCATGCATCATCCATTTTCATATCCACATGAGACCTCAGATATCGATGCTTATGTGGACTCTCCAATTGGGAGTCCTGCATC GTGGAATTCTCACTCCCTGATCCAAAGAGAGACTGATGCAGCTCGGATGAGGAAGAAGTGGGGAAGTGCTCAGAAACCTATTCTTGTTGCCAATTCATTC AATAATCAGTCTCGTAAGGATGTAACAAAAGGGTTCAAACGGTTGTTAAAGTTTGGAAGGAAAAGTCGTGGGGCAGAGAGTTTGGTTGACTGGATTTCTG CTACAACTTCTGAAGGAGATGATGATACAGAAGATGGGCGAGATCCTGCTAATCGGTCATCAGAAGATTTGAGGAAATCAAGAATGGGATTCTCACATGG TCATCCTTCAGATGATGGCTTAAACGAAAGTGAGTTGTTCAATGAGCAGGTTCACACTTTAAATAGCTCCATACCAGCACCTCCAGAAAACTTCAAATTG AGGGATGATCTCATGTCCGGAAGCTCAATTAAAGCACCACGGTCATTCTTCTCACTGACATCGTTCAGAAGCAAGGGTAGTGACTCAAAGCTTAGATAA
AA sequence Show only first row Show all	>Potri.003G070400.11 pacid=42786359 polypeptide=Potri.003G070400.11.p locus=Potri.003G070400 ID=Potri.003G070400.11.v4.1 annot-version=v4.1 MKSNTLLDYAVFELSPNLTRCDLFVSSNGNTEKLASGSVKPFLSHLKFAEEQASQAVQSIKLEFDGCRNAETWFTKGTLERFVHFVSAPEVLEMVNTFDA EMSQLEAARKIYSQGSRDQLSGALGGDGTGTTAGADATKKELLRAIDVRLAAVREDLATAYARASATGFNLDTVRDLQHFADRFGARRLNEACTKFMLLC LRRPDLINPWKPSVEDQVVRSSWGSDMSIDDPTEDESGSYMNRPHQNPFQNKHQQQQAGKEIQQLDKTQTQHPDQSKPTTCQQPDSSRAAQQQTFQNEKK EEEKKKEEAGNESSTSQPSHPSRRLSVQDRINLFENKQKESSGEKPVAVGKSAELRRLSSDVSSASAIEKAVLKRWSGASDMSIDLGNDKKDDGNIDSPL CTPSSSFVSGTKSNVFPVSSDDDKDQKGFNDTASAANLVKLETRSVSRLKDQGELQTHGGGIVGKDEEVNLKGNLKDQVVSLAELRSSAGRGEETGVGDQ VVREDKLTGTSDREEKTGGVEAQLSFQEKSRGFPNTVKTVAEKNQASLQTQIGNFAGRVGDVKFGNRIDDIEVRDPPLSQSRSRISQTHTLSLSGQFEGG FGVKGKELPTKGTDFDLSASQTPWKLFKGEVDHARKENTEQIKEEDLEVSRMKVHKQPSSGTEQFKKLQGRRDESRDESGYIHGINKLSFPGNKFSKSQE SVVTLQVPSAGQAQRVRKSKGNQELNDELKMKANELEKLFAEHKLRVPGDQSSSVRRSKPAEVQAEQAESSQYRKPVAVEISPVEFQEKKTVLEPAGSSS DLGKFSTPPRKIVDHQDHGSSPRQSFSELSFSDNSRGKFYERYMQKRDAKLREESGTERVEKEAKLKAMQESLEQSRAEMKARFSSSVDRQNSLSSTRRR AEKLRSFNFHSSVKREQPVDSIQSEADEDLSEFPEQNYYGEDRSFSEVSYGDIASRRSQNKFFPNRYLSSPSPHTTSAPVPRSVSKISNPSSGRRRVQSE NPLAQSVPNFSDFRKENTKPFSGVSKAANRSQVRTYACSKSSSEEIPLVNEEKNRRSQSLRKSSAGPIEFNDFPPLNSDGVVLAPLKFDQPEPMPYDKFS KNVETKPFLRKCNGIGPGSGATVATLKGMVAPESLKTEEFEESPFEAEESVDEAKEEEDEELETTEVEGCANMDNGKLRLSQDSDKIGMSGSENGDSLRS ISQIDPSSVSELAASVPSTFHALGSLQDSPGESPVSWNSRMHHPFSYPHETSDIDAYVDSPIGSPASWNSHSLIQRETDAARMRKKWGSAQKPILVANSF NNQSRKDVTKGFKRLLKFGRKSRGAESLVDWISATTSEGDDDTEDGRDPANRSSEDLRKSRMGFSHGHPSDDGLNESELFNEQVHTLNSSIPAPPENFKL RDDLMSGSSIKAPRSFFSLTSFRSKGSDSKLR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14172			unknown protein		Potri.003G070400 [exp]	0	1
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Potri.012G107900 [exp]	3.16	0.9064
AT1G21280			unknown protein		Potri.006G109250 [exp]	4.24	0.9220
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Potri.006G109200 [exp]	6.00	0.8908
AT1G21280			unknown protein		Potri.004G133001 [exp]	6.32	0.9140
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Potri.017G138401 [exp]	6.92	0.9271
AT1G61850			phospholipases;galactolipases ...		Potri.004G018700 [exp]	9.48	0.8941
AT3G52120			SWAP (Suppressor-of-White-APri...		Potri.009G064600 [exp]	11.22	0.8949
AT4G10550			Subtilase family protein (.1.2...		Potri.001G450401 [exp]	14.07	0.8568
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.016G097800 [exp]	15.23	0.8955	ALPHA.3
AT5G65960			GTP binding (.1)		Potri.002G177100 [exp]	16.73	0.8974

Compare expression of checked genes

Potri.003G070400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.