Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14200 147 / 1e-43 Chaperone DnaJ-domain superfamily protein (.1) AT1G72416 97 / 1e-24 Chaperone DnaJ-domain superfamily protein (.1.2.3.4.5) AT1G56300 77 / 3e-17 Chaperone DnaJ-domain superfamily protein (.1) AT5G01390 68 / 2e-13 DNAJ heat shock family protein (.1.2.3.4) AT1G59725 68 / 4e-13 DNAJ heat shock family protein (.1) AT1G71000 66 / 4e-13 Chaperone DnaJ-domain superfamily protein (.1) AT4G28480 64 / 6e-12 DNAJ heat shock family protein (.1.2) AT3G47940 64 / 9e-12 DNAJ heat shock family protein (.1) AT3G08910 64 / 9e-12 DNAJ heat shock family protein (.1) AT5G16650 61 / 1e-11 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G164700 [exp] 262 / 1e-88 AT3G14200 186 / 4e-59 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G020300 [exp] 74 / 3e-16 AT1G56300 217 / 2e-73 Chaperone DnaJ-domain superfamily protein (.1) Potri.013G010800 [exp] 73 / 6e-16 AT1G56300 200 / 9e-67 Chaperone DnaJ-domain superfamily protein (.1) Potri.010G113400 [exp] 72 / 3e-15 AT1G71000 148 / 2e-45 Chaperone DnaJ-domain superfamily protein (.1) Potri.008G194000 [exp] 69 / 1e-13 AT1G10350 402 / 4e-141 DNAJ heat shock family protein (.1) Potri.010G035000 [exp] 69 / 2e-13 AT1G10350 429 / 1e-151 DNAJ heat shock family protein (.1) Potri.006G246700 [exp] 68 / 3e-13 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1) Potri.018G034600 [exp] 67 / 8e-13 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.017G016100 [exp] 66 / 2e-12 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029862 [exp] 77 / 2e-17 AT1G56300 201 / 9e-67 Chaperone DnaJ-domain superfamily protein (.1) Lus10020685 [exp] 77 / 4e-17 AT1G56300 200 / 1e-66 Chaperone DnaJ-domain superfamily protein (.1) Lus10015402 [exp] 69 / 2e-13 AT2G20560 483 / 7e-173 DNAJ heat shock family protein (.1) Lus10013981 [exp] 69 / 3e-13 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1) Lus10027803 [exp] 65 / 4e-12 AT3G08910 504 / 0.0 DNAJ heat shock family protein (.1) Lus10005033 [exp] 65 / 4e-12 AT3G08910 503 / 0.0 DNAJ heat shock family protein (.1) Lus10015078 [exp] 65 / 5e-12 AT5G03160 638 / 0.0 homolog of mamallian P58IPK (.1) Lus10026315 [exp] 65 / 5e-12 AT3G12170 355 / 3e-124 Chaperone DnaJ-domain superfamily protein (.1) Lus10023181 [exp] 65 / 5e-12 AT5G03160 507 / 2e-178 homolog of mamallian P58IPK (.1) Lus10030803 [exp] 65 / 6e-12 AT1G10350 434 / 2e-153 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Potri.003G070600.1 pacid=42785685 polypeptide=Potri.003G070600.1.p locus=Potri.003G070600 ID=Potri.003G070600.1.v4.1 annot-version=v4.1 ATGGCAAACGGAGGAGAAGATAAATGGAAAAGCAATGACTTATATCAAGTCTTGGGGTTGAATAAGGAATGCACTGATACAGAGCTCAGGAGTGCTTATA AGAAACTTGCACTGAGATGGCATCCAGATCGATGTTCAGCTTCAGGAAATTCTGAGTTCGTTGAAGAAGCCAAAAAGAAGTTTCAGGCAATTCAACAGGC CTATTCTGTTCTTTCTGACACCAACAAGAGGTTTCTTTACGACGTTGGTGTTGATGACAGTGATGACGACGAAAATGGAATGGGTGATTTTCTGAATGAA ATGGCTGTCATGATGAGCCAAACGAAGCCTAGCGAAAACATGGAGGAGAGCCTAGAGGAACTGCAAGAATTATTTGACGAGATGTTCCAAGAGGATCTGC ATTCGTTTGGGATTGACAGTCAGGCTGCTCCTTCATGTCCTCCTTCTTATGTATCCTACAGCGAAAGTTCCAACTCAAATAACAAACGTGTTTCTGCTGA TATGAACTTGGGGAAGACTAAAGTGGATGATTCTTCTAGCTTCAACTCTCACTTTGAGAAATTCTGTTTAGGGGTGGAACAGCAGCAACCTTTCAAGAAG GTGAAGGTGGGAGTAAGAGGAGGAATTCAAGGAGGAGCCAGCGGCAGACGAAGGCAAGACAAGAAACAAAGAGTTTCTTCGGGCTATAATGTCTCCTCCC ATGACTACGGTATATCTGCTTCATGA
AA sequence Show only first row Show all	>Potri.003G070600.1 pacid=42785685 polypeptide=Potri.003G070600.1.p locus=Potri.003G070600 ID=Potri.003G070600.1.v4.1 annot-version=v4.1 MANGGEDKWKSNDLYQVLGLNKECTDTELRSAYKKLALRWHPDRCSASGNSEFVEEAKKKFQAIQQAYSVLSDTNKRFLYDVGVDDSDDDENGMGDFLNE MAVMMSQTKPSENMEESLEELQELFDEMFQEDLHSFGIDSQAAPSCPPSYVSYSESSNSNNKRVSADMNLGKTKVDDSSSFNSHFEKFCLGVEQQQPFKK VKVGVRGGIQGGASGRRRQDKKQRVSSGYNVSSHDYGISAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14200			Chaperone DnaJ-domain superfam...		Potri.003G070600 [exp]	0	1
AT3G54540		ABCF4, ATGCN4	ATP-binding cassette F4, gener...		Potri.016G015550 [exp]	3.46	0.7891
AT1G51200			A20/AN1-like zinc finger famil...		Potri.003G205500 [exp]	5.38	0.7938
AT1G07400			HSP20-like chaperones superfam...		Potri.006G073500 [exp]	9.16	0.7773
AT1G56300			Chaperone DnaJ-domain superfam...		Potri.013G010800 [exp]	13.19	0.6594
AT1G17100			SOUL heme-binding family prote...		Potri.015G080000 [exp]	13.41	0.7639
					Potri.015G013950 [exp]	16.61	0.7488
AT1G63770			Peptidase M1 family protein (....		Potri.001G101975 [exp]	18.70	0.7501
AT3G04750			Tetratricopeptide repeat (TPR)...		Potri.013G041100 [exp]	23.47	0.7423
AT3G01820			P-loop containing nucleoside t...		Potri.015G093200 [exp]	26.45	0.7477
AT2G43770			Transducin/WD40 repeat-like su...		Potri.019G096900 [exp]	26.94	0.7582

Compare expression of checked genes

Potri.003G070600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.