Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54050 158 / 3e-50 HSP20-like chaperones superfamily protein (.1) AT5G12030 92 / 5e-24 AT-HSP17.6A heat shock protein 17.6A (.1) AT5G12020 90 / 2e-23 HSP17.6II 17.6 kDa class II heat shock protein (.1) AT1G53540 71 / 3e-16 HSP20-like chaperones superfamily protein (.1) AT5G59720 64 / 2e-13 HSP18.2 HSP18.1CI heat shock protein 18.2 (.1) AT4G10250 63 / 7e-13 ATHSP22.0 HSP20-like chaperones superfamily protein (.1) AT3G46230 62 / 2e-12 ATHSP17.4 ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.4, heat shock protein 17.4 (.1) AT1G07400 61 / 3e-12 HSP20-like chaperones superfamily protein (.1) AT1G59860 58 / 3e-11 HSP20-like chaperones superfamily protein (.1) AT5G37670 55 / 4e-10 HSP15.7CI HSP20-like chaperones superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G164200 [exp] 132 / 8e-41 AT1G54050 92 / 3e-25 HSP20-like chaperones superfamily protein (.1) Potri.006G223900 [exp] 99 / 5e-27 AT5G12020 154 / 8e-49 17.6 kDa class II heat shock protein (.1) Potri.019G081250 [exp] 68 / 5e-15 AT2G29500 182 / 6e-60 HSP20-like chaperones superfamily protein (.1) Potri.009G148000 [exp] 67 / 1e-14 AT2G29500 190 / 7e-63 HSP20-like chaperones superfamily protein (.1) Potri.004G187450 [exp] 66 / 3e-14 AT2G29500 221 / 5e-75 HSP20-like chaperones superfamily protein (.1) Potri.009G147900 [exp] 66 / 4e-14 AT2G29500 193 / 5e-64 HSP20-like chaperones superfamily protein (.1) Potri.009G049800 [exp] 65 / 8e-14 AT2G29500 152 / 4e-48 HSP20-like chaperones superfamily protein (.1) Potri.004G187400 [exp] 65 / 1e-13 AT1G07400 193 / 7e-64 HSP20-like chaperones superfamily protein (.1) Potri.013G089200 [exp] 66 / 2e-13 AT4G10250 225 / 1e-74 HSP20-like chaperones superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025005 [exp] 88 / 2e-22 AT5G12020 166 / 2e-53 17.6 kDa class II heat shock protein (.1) Lus10026453 [exp] 86 / 1e-21 AT5G12020 170 / 8e-55 17.6 kDa class II heat shock protein (.1) Lus10040560 [exp] 71 / 1e-15 AT4G10250 200 / 1e-65 HSP20-like chaperones superfamily protein (.1) Lus10000932 [exp] 71 / 1e-15 AT4G10250 200 / 2e-65 HSP20-like chaperones superfamily protein (.1) Lus10042408 [exp] 70 / 4e-15 AT4G10250 154 / 1e-47 HSP20-like chaperones superfamily protein (.1) Lus10004039 [exp] 61 / 2e-12 AT5G37670 150 / 3e-48 HSP20-like chaperones superfamily protein (.1) Lus10026262 [exp] 62 / 4e-12 AT4G10250 152 / 5e-47 HSP20-like chaperones superfamily protein (.1) Lus10009085 [exp] 56 / 3e-10 AT1G53540 232 / 2e-79 HSP20-like chaperones superfamily protein (.1) Lus10020815 [exp] 55 / 4e-10 AT5G37670 166 / 6e-54 HSP20-like chaperones superfamily protein (.1) Lus10040830 [exp] 54 / 1e-09 AT1G53540 236 / 6e-81 HSP20-like chaperones superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [poplar] [flax] HSP20 PF00011 [poplar] [flax] HSP20 Hsp20/alpha crystallin family
Representative CDS sequence Show only first row Show all	>Potri.003G071100.1 pacid=42786408 polypeptide=Potri.003G071100.1.p locus=Potri.003G071100 ID=Potri.003G071100.1.v4.1 annot-version=v4.1 ATGAACCGAGTAGTAGATTCAGATGTGTTTGATGCAGTGAACCATTTGTTTAGCTTCCCTGAAAACTTTGAGAAGTTGATGTTTCATCCGCGGTCGAGTG ATCATACAACCAATGAAATCAGGAGCAATAGTATTCCCGTCGACATTTTGGATGCTCCCAAAGATTATGTTTTCTACATGGATGTCCCTGGCTTGTCCAA GTCTGATATCCAGGTTACTGTTGAAGATGAGAATACTCTGGTGATCAAAAGCGGAGGGAAGAGGAAACGCGAAGATGGTGATGAGGAAGGCTGCAAGTAC ATCAGGCTTGAAAGGAAGGCACCTCAGAAGCTGATTAGGAAGTTCCGGTTGCCTGAAAATGCCAATGTGTCTGCCATCACTGCTAAATGCGAAAATGGGG TTTTAACCGTGGTTGTTGGGAAGCATCCTCCACCACCCAAACCTAAGACAGTTGAAGTTACCATCTCCTGA
AA sequence Show only first row Show all	>Potri.003G071100.1 pacid=42786408 polypeptide=Potri.003G071100.1.p locus=Potri.003G071100 ID=Potri.003G071100.1.v4.1 annot-version=v4.1 MNRVVDSDVFDAVNHLFSFPENFEKLMFHPRSSDHTTNEIRSNSIPVDILDAPKDYVFYMDVPGLSKSDIQVTVEDENTLVIKSGGKRKREDGDEEGCKY IRLERKAPQKLIRKFRLPENANVSAITAKCENGVLTVVVGKHPPPPKPKTVEVTIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54050			HSP20-like chaperones superfam...		Potri.003G071100 [exp]	0	1
AT1G07400			HSP20-like chaperones superfam...		Potri.009G039200 [exp]	2.82	0.9826
AT5G59720		HSP18.2 HSP18.1...	heat shock protein 18.2 (.1)		Potri.008G062350 [exp]	3.16	0.9880
AT2G29500			HSP20-like chaperones superfam...		Potri.009G049900 [exp]	4.47	0.9847
AT2G40340	AP2_ERF	AtERF48, DREB2C	Integrase-type DNA-binding sup...		Potri.008G073600 [exp]	5.47	0.9300	DREB8,Pt-DREB2.4
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Potri.013G018000 [exp]	6.24	0.9834	HSP70.11
AT5G12020		HSP17.6II	17.6 kDa class II heat shock p...		Potri.006G223900 [exp]	6.32	0.9812	HSP17.11
AT5G59720		HSP18.2 HSP18.1...	heat shock protein 18.2 (.1)		Potri.006G093500 [exp]	8.12	0.9788	HSP18.1
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Potri.019G072300 [exp]	8.36	0.9249	Pt-SGR2.2
AT2G29500			HSP20-like chaperones superfam...		Potri.009G148000 [exp]	10.24	0.9778
AT2G29500			HSP20-like chaperones superfam...		Potri.004G187450 [exp]	11.31	0.9772

Compare expression of checked genes

Potri.003G071100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.