Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72370 385 / 5e-135 AP40, RPSAA, RP40, P40 40s ribosomal protein SA (.1.2) AT3G04770 382 / 2e-134 RPSAB 40s ribosomal protein SA B (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G164000 [exp] 480 / 1e-172 AT1G72370 386 / 9e-136 40s ribosomal protein SA (.1.2) Potri.015G112900 [exp] 407 / 1e-143 AT3G04770 399 / 6e-141 40s ribosomal protein SA B (.1.2) Potri.012G117600 [exp] 395 / 7e-139 AT3G04770 393 / 1e-138 40s ribosomal protein SA B (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013183 [exp] 410 / 7e-145 AT3G04770 424 / 7e-151 40s ribosomal protein SA B (.1.2) Lus10037445 [exp] 407 / 1e-143 AT3G04770 413 / 9e-147 40s ribosomal protein SA B (.1.2) Lus10018284 [exp] 387 / 1e-135 AT3G04770 424 / 3e-151 40s ribosomal protein SA B (.1.2) Lus10040626 [exp] 384 / 1e-134 AT3G04770 421 / 5e-150 40s ribosomal protein SA B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0067 [poplar] [flax] SIS PF00318 [poplar] [flax] Ribosomal_S2 Ribosomal protein S2
Representative CDS sequence Show only first row Show all	>Potri.003G071200.1 pacid=42787528 polypeptide=Potri.003G071200.1.p locus=Potri.003G071200 ID=Potri.003G071200.1.v4.1 annot-version=v4.1 ATGGCGACAGCAACCGGAGCAGCTGCGGCTGCACCAACAAGGGCACTGTCACAGAAAGAGCTAGACATTCAGATGATGTTGGCTGCTGAGGTTCATCTTG GCACCAAAAATTGTGACTTCCAAATGGAACGTTATGTTTTCAAGCGCCGCAATGATGGAATTTATATTATCAACCTTGGAAAAACATGGGAAAAGCTTTT ACTGGCTGCCAGAGTTATTGTTGCAATTGAGAACCCCCAGGATATGATTGTTCAATCTGCGAGGCCCTATGGTCAAAGAGCTGTCCTCAAGTTTGCCCAG TACACTGGTGCTCATGCAATTGCTGGAAGGCATACCCCTGGTACCTTCACTAACCAGATGCAGACTTCATTCAGTGAACCTCGTCTCTTGATCCTCACTG ATCCAAGGACTGATCACCAGCCTATCAAGGAAGCAGCTCTTGGAAACATTCCAACCATTGCTTTCTGTGACACTGACTCTCCCATGAACTTTGTGGATAT TGGCATTCCCGCTAATAACAAAGGCAAGCACAGCATCGGATGCCTGTTTTGGCTGTTGGCAAGAATGGTTCTGCAGATGCGTGGAACTATTCCGCAAGGG CACAAATGGGATATTATGGTGGACTTGTTCTTTTATAGGGAACCTGAAGAAGCCAAGCAACAGGAAGAGGAGGATGCACTACCAGCTGCTGATTATGCTC TCCCTCCTCCTGATTATGGGATTTCTGCAGGTGAATGGGGTAGCACTATAGCTGATAGTCAATGGACTACTGATGTTGCCCAACAACCCATTCCTGCTGC CAATTTCTTCCCAGAACAAGGTGTTCTTTCTGGCGAATGGGGTGCAGCTCCGGCTCCAGCTCCAGCTCCAGCTCCTGCTGCTGAACAGCTCCCAGGTGCT GAACTTGGTGTACCTCCCCCTGCTGCTGCTGCTACTGGCTGGGACGTTTAA
AA sequence Show only first row Show all	>Potri.003G071200.1 pacid=42787528 polypeptide=Potri.003G071200.1.p locus=Potri.003G071200 ID=Potri.003G071200.1.v4.1 annot-version=v4.1 MATATGAAAAAPTRALSQKELDIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLLLAARVIVAIENPQDMIVQSARPYGQRAVLKFAQ YTGAHAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMNFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIPQG HKWDIMVDLFFYREPEEAKQQEEEDALPAADYALPPPDYGISAGEWGSTIADSQWTTDVAQQPIPAANFFPEQGVLSGEWGAAPAPAPAPAPAAEQLPGA ELGVPPPAAAATGWDV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72370		AP40, RPSAA, RP...	40s ribosomal protein SA (.1.2...		Potri.003G071200 [exp]	0	1
AT1G72370		AP40, RPSAA, RP...	40s ribosomal protein SA (.1.2...		Potri.001G164000 [exp]	1.41	0.9693
AT1G74270			Ribosomal protein L35Ae family...		Potri.008G059400 [exp]	2.82	0.9637
AT3G05590		RPL18	ribosomal protein L18 (.1)		Potri.014G127300 [exp]	3.00	0.9746	RPL18.10
AT1G43170		RPL3A, ARP1, EM...	embryo defective 2207, ribosom...		Potri.005G194500 [exp]	5.65	0.9660	ARP1.1
AT1G57720			Translation elongation factor ...		Potri.003G004700 [exp]	6.16	0.9544
AT1G67430			Ribosomal protein L22p/L17e fa...		Potri.015G094400 [exp]	7.93	0.9682	RPL17.2
AT4G16720			Ribosomal protein L23/L15e fam...		Potri.013G106800 [exp]	8.12	0.9534	Pt-RPL15.2
AT2G09990			Ribosomal protein S5 domain 2-...		Potri.008G150000 [exp]	8.83	0.9648
AT4G14320			Zinc-binding ribosomal protein...		Potri.005G092500 [exp]	9.21	0.9655
AT3G09200			Ribosomal protein L10 family p...		Potri.010G191200 [exp]	10.95	0.9516

Compare expression of checked genes

Potri.003G071200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.