Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14205 1013 / 0 Phosphoinositide phosphatase family protein (.1) AT5G20840 933 / 0 Phosphoinositide phosphatase family protein (.1) AT3G43220 925 / 0 Phosphoinositide phosphatase family protein (.1.2) AT1G17340 728 / 0 Phosphoinositide phosphatase family protein (.1) AT1G22620 726 / 0 ATSAC1 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) AT3G51460 175 / 3e-46 rhd4 ROOT HAIR DEFECTIVE4, Phosphoinositide phosphatase family protein (.1) AT5G66020 168 / 5e-44 IBS2, ATSAC1B, ATSAC6, SACIB IMPAIRED IN BABA-INDUCED STERILITY 2, SAC DOMAIN-CONTAINING PROTEIN 6, SUPPRESSOR OF ACTIN 1B, Phosphoinositide phosphatase family protein (.1) AT3G51830 156 / 6e-40 ATG5, SAC8 SAC domain-containing protein 8 (.1.2) AT3G59770 123 / 2e-28 AtSAC9, SAC9 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G163900 [exp] 1451 / 0 AT3G14205 987 / 0.0 Phosphoinositide phosphatase family protein (.1) Potri.018G063700 [exp] 1134 / 0 AT3G43220 1043 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Potri.006G136400 [exp] 1091 / 0 AT3G43220 1018 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Potri.019G080300 [exp] 712 / 0 AT1G22620 1397 / 0.0 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) Potri.013G107950 [exp] 698 / 0 AT1G22620 1355 / 0.0 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) Potri.005G100500 [exp] 182 / 7e-49 AT3G51460 976 / 0.0 ROOT HAIR DEFECTIVE4, Phosphoinositide phosphatase family protein (.1) Potri.016G118300 [exp] 162 / 6e-42 AT3G51830 882 / 0.0 SAC domain-containing protein 8 (.1.2) Potri.013G128500 [exp] 100 / 4e-21 AT3G59770 2267 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037446 [exp] 1170 / 0 AT3G14205 947 / 0.0 Phosphoinositide phosphatase family protein (.1) Lus10013184 [exp] 1134 / 0 AT3G14205 923 / 0.0 Phosphoinositide phosphatase family protein (.1) Lus10027650 [exp] 1053 / 0 AT3G43220 936 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Lus10039913 [exp] 922 / 0 AT3G43220 842 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Lus10014827 [exp] 725 / 0 AT1G22620 1389 / 0.0 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) Lus10016697 [exp] 169 / 3e-44 AT3G51460 947 / 0.0 ROOT HAIR DEFECTIVE4, Phosphoinositide phosphatase family protein (.1) Lus10035993 [exp] 163 / 3e-42 AT3G51460 929 / 0.0 ROOT HAIR DEFECTIVE4, Phosphoinositide phosphatase family protein (.1) Lus10016941 [exp] 149 / 1e-39 AT1G22620 364 / 3e-119 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) Lus10025267 [exp] 140 / 1e-34 AT3G51830 731 / 0.0 SAC domain-containing protein 8 (.1.2) Lus10009080 [exp] 136 / 3e-33 AT3G51830 800 / 0.0 SAC domain-containing protein 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [poplar] [flax] Phosphatase PF02383 [poplar] [flax] Syja_N SacI homology domain
Representative CDS sequence Show only first row Show all	>Potri.003G071300.5 pacid=42787383 polypeptide=Potri.003G071300.5.p locus=Potri.003G071300 ID=Potri.003G071300.5.v4.1 annot-version=v4.1 ATGGAAACAAACTTGATTGGTGGTGCCTCCAATTATTGTTACTTGCAGAAATTCAGACTCTATGAGACTCGCTCGAATTTTTATATGATCGGAAGAGACA AGAACAGAACCCTTTGCAGGGTGTTAAAGATTGATCGGTTAGAGCCATCTGAACTCGTTGTTCTTGAAGATTCTACAACATATTCAGAAAGTGAATGCGT TGACCTGCTAAGGCGAATACATGAAGGCAATAAGTCAACGGGTGGACTTAAATTTGTCACTATTTGTTACGGAATTGTTGGGTTTATTAAATTTTTGGGA CCCCATTACATGCTGCTGATAACAAAAAGAAGGAAGATCGGTGCAATTTGTGGCCATACAGTTTATTCTATAACCAAGAGCGAGATGATTCCTATTCCAA ATTCTACTGTGCAGTCCAATATGACTAATTCTAAGAACGAGAACAGATATAAGAAGCTCCTGTGCACGGTGGATCTTACAAGGGACTTCTTTTTCAGCTA CTCCTACCATGTTATGCACAGTCTTCAGAAGAATTTATCTTGTAATGAGACGGGACAAGGTCACTATGAATCAATGTTTGTTTGGAATGAATTCTTAACT CGAGGAATTCGAAATAACCTCAAGAATACTCTATGGACAGTGGCATTAGTGTATGGCTTCTTTAAACAGGTCAAACTTTCAGTACCTGGCAGGGAGTTTA AGCTGGCTCTCATTGCTAGACGATCACGGCATTATGCTGGCACAAGATATTTAAAACGAGGCGTGAATGAGAAGGGTAGAGTTGCTAATGATGTTGAGAC AGAACAGATAATGTTTGAAGATGTTCCTGAAGAACAGCCAGTGCAAATAAGTTCTGTTGTTCAGAATCGGGGTTCAATCCCGCTTTTCTGGTCTCAAGAA ACTTCACGATTGAATATCAAACCTGACATTATGTTGTCAAGGAAGGACCAAAATTTTGAGGCAACAAAACTTCATTTTGAAAATCTTGTGAAGAGATATG GAAGTCCGATAATTATTTTGAATTTAATAAAGTCGCGTGAAAAGAAGCCTCGGGAAACCATACTTCGTGCTGAGTTTGCAAATGCCATCAGATTTATCAA TAAAAGTTTACCCGAGGAGAATCGCCTAAAGTTTCTGCACTGGGATTTGCATAAACACTCTAGAAAGGCTACAAATGTCTTGGCACTTCTAGGAAGAGTT GCAAGCTATGCATTGAATCTAACTGGGATCTTTTATTGTCAAGTCATGCCAAGTTCAAGTTCCAAGGGATTGTTAAATGGGTCCTGCTTTGAGGAACGTG ATGGTGACTATTCTCTTGAAAATCCTTCTAGTGACAATGTCAGCAAGTTGGATTCAGAAATTGCCAAAGCTGAATGTGATGCAAATCAAAATCAGAGTAT CAACGTTCCAATGTTCCAAAGTGGTGTTTTAAGGACCAATTGCATAGACTGTTTAGATCGCACAAATGTAGCACAATATGCCTATGGATTGGTGGCTCTA GGGCATCAGTTGCATGCACTAGGATATATGGAATCCCCAAGTATTGATCTAGATAATCCTTTAGCTGAAGATTTAATGAGGATTTATGAGACGATGGGCG ACACACTTGCACTGCAGTATGGTGGGTCCGCTGCTCACAACAAGATATTTTCTGAGAGAAGAGGTCAGTGGAAAGCAGCAACTCAGTCCCAGGAATTCTT TAGAACTCTACAACGTTATTACAGTAATGCCTACATGGATGCTGAGAAACAAGATGCTATTAATGTGTTCTTGGGTCATTTCCAGCCACAGCAGGGAAAG CCAGCACTGTGGGAATTGGATTCGGACCAGCATTGTGATGTTGGAAGGCGTGGTCCTGATTTAGTTGAGAATGCTAGGTCATTCATTAAAAGGTCACTGT CAGATGGCAATCTTCGGTGTGAAAATGAGTCACCTGTAGCTGCCAATATTGGATACAGTAAGCCTCTGTCTGAAAAGGAGGGAGGAGTTAATAATGGTCT TTCAGACTCAAATCCGGAGATATCAACTTGTGAAAGTGACATATCATATTCCAGGTACACTCCCTCAATGCCTTGCAGGAAGCTTTTCAAAGATGTGGAG GAATACCAATGTTTTGAAAGTAATCATATTTGTTATGACGAACATGGGGATGCTTGCAGCTGCTCAAATTTCCTTGATATGGACTGGCTTTCTACATCTG GGAATTCATGTGAAGAAGATCTGTGTGATAGGTCTAGTGCTGGCCTATCATCTGAGAATCTTGGGAACGATGTGAAAATAGAAACAACCATATCTGCTAG TGAGTCCGGATCTAGCTTGAAGGGAAGAAGTCAAACTGGATCTTCTGATGACATCGCGGGTGGATTCCCAGACCGCTTTGTCCAGTGGGTAATGAGTGGG GAGATGCTGTTCCATTGA
AA sequence Show only first row Show all	>Potri.003G071300.5 pacid=42787383 polypeptide=Potri.003G071300.5.p locus=Potri.003G071300 ID=Potri.003G071300.5.v4.1 annot-version=v4.1 METNLIGGASNYCYLQKFRLYETRSNFYMIGRDKNRTLCRVLKIDRLEPSELVVLEDSTTYSESECVDLLRRIHEGNKSTGGLKFVTICYGIVGFIKFLG PHYMLLITKRRKIGAICGHTVYSITKSEMIPIPNSTVQSNMTNSKNENRYKKLLCTVDLTRDFFFSYSYHVMHSLQKNLSCNETGQGHYESMFVWNEFLT RGIRNNLKNTLWTVALVYGFFKQVKLSVPGREFKLALIARRSRHYAGTRYLKRGVNEKGRVANDVETEQIMFEDVPEEQPVQISSVVQNRGSIPLFWSQE TSRLNIKPDIMLSRKDQNFEATKLHFENLVKRYGSPIIILNLIKSREKKPRETILRAEFANAIRFINKSLPEENRLKFLHWDLHKHSRKATNVLALLGRV ASYALNLTGIFYCQVMPSSSSKGLLNGSCFEERDGDYSLENPSSDNVSKLDSEIAKAECDANQNQSINVPMFQSGVLRTNCIDCLDRTNVAQYAYGLVAL GHQLHALGYMESPSIDLDNPLAEDLMRIYETMGDTLALQYGGSAAHNKIFSERRGQWKAATQSQEFFRTLQRYYSNAYMDAEKQDAINVFLGHFQPQQGK PALWELDSDQHCDVGRRGPDLVENARSFIKRSLSDGNLRCENESPVAANIGYSKPLSEKEGGVNNGLSDSNPEISTCESDISYSRYTPSMPCRKLFKDVE EYQCFESNHICYDEHGDACSCSNFLDMDWLSTSGNSCEEDLCDRSSAGLSSENLGNDVKIETTISASESGSSLKGRSQTGSSDDIAGGFPDRFVQWVMSG EMLFH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14205			Phosphoinositide phosphatase f...		Potri.003G071300 [exp]	0	1
AT1G33260			Protein kinase superfamily pro...		Potri.001G454800 [exp]	7.07	0.6964
AT4G04960			Concanavalin A-like lectin pro...		Potri.004G044200 [exp]	10.95	0.7299
AT1G24530			Transducin/WD40 repeat-like su...		Potri.010G050900 [exp]	11.66	0.7265
AT4G05440		EDA35	embryo sac development arrest ...		Potri.006G050600 [exp]	30.52	0.5806
AT3G01400			ARM repeat superfamily protein...		Potri.002G118800 [exp]	36.24	0.7094
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Potri.010G108200 [exp]	45.13	0.7071
AT1G01650		ATSPPL4	ARABIDOPSIS THALIANA SIGNAL PE...		Potri.014G085300 [exp]	47.83	0.6925
AT1G53570		MAPKKK3, MAP3KA	MAP KINASE KINASE KINASE 3, mi...		Potri.005G062500 [exp]	49.69	0.6497	Pt-MAP3.1
AT5G01750			Protein of unknown function (D...		Potri.016G131800 [exp]	55.00	0.6399
AT1G16670			Protein kinase superfamily pro...		Potri.006G128500 [exp]	71.49	0.6773

Compare expression of checked genes

Potri.003G071300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.