Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40990 387 / 9e-134 GLIP1 GDSL lipase 1 (.1) AT1G53920 374 / 2e-128 GLIP5 GDSL-motif lipase 5 (.1) AT1G53940 366 / 8e-125 GLIP2 GDSL-motif lipase 2 (.1) AT3G14225 359 / 9e-123 GLIP4, EMB1474 GDSL-motif lipase 4 (.1) AT1G53990 352 / 2e-120 GLIP3 GDSL-motif lipase 3 (.1) AT1G54030 210 / 3e-64 GOLD36, MVP1 MODIFIED VACUOLE PHENOTYPE 1, GOLGI DEFECTS 36, GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71120 196 / 1e-59 GLIP6 GDSL-motif lipase/hydrolase 6 (.1) AT5G15720 196 / 2e-59 GLIP7 GDSL-motif lipase 7 (.1) AT2G23540 194 / 1e-58 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G33370 188 / 2e-56 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G065100 [exp] 473 / 7e-168 AT5G40990 375 / 4e-129 GDSL lipase 1 (.1) Potri.017G134701 [exp] 431 / 3e-151 AT5G40990 359 / 4e-123 GDSL lipase 1 (.1) Potri.003G071500 [exp] 427 / 7e-150 AT1G53920 436 / 3e-153 GDSL-motif lipase 5 (.1) Potri.017G136601 [exp] 424 / 5e-148 AT5G40990 337 / 8e-114 GDSL lipase 1 (.1) Potri.017G136501 [exp] 418 / 1e-145 AT5G40990 334 / 1e-112 GDSL lipase 1 (.1) Potri.017G137000 [exp] 418 / 1e-145 AT5G40990 334 / 1e-112 GDSL lipase 1 (.1) Potri.017G134601 [exp] 407 / 7e-142 AT5G40990 358 / 8e-123 GDSL lipase 1 (.1) Potri.004G084366 [exp] 371 / 8e-128 AT5G40990 289 / 2e-95 GDSL lipase 1 (.1) Potri.017G134350 [exp] 369 / 3e-127 AT5G40990 300 / 6e-100 GDSL lipase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013185 [exp] 349 / 1e-118 AT1G53920 447 / 3e-157 GDSL-motif lipase 5 (.1) Lus10037447 [exp] 343 / 4e-116 AT1G53920 430 / 4e-150 GDSL-motif lipase 5 (.1) Lus10041877 [exp] 192 / 5e-58 AT3G14820 321 / 1e-108 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10037598 [exp] 191 / 1e-57 AT3G16370 502 / 6e-180 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028423 [exp] 189 / 7e-57 AT3G14820 317 / 7e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10006856 [exp] 189 / 8e-57 AT3G16370 507 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10021540 [exp] 189 / 2e-56 AT5G55050 357 / 5e-122 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016929 [exp] 187 / 2e-55 AT1G71691 473 / 2e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10028424 [exp] 185 / 2e-55 AT3G14820 298 / 2e-99 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10031520 [exp] 186 / 3e-55 AT2G04570 473 / 3e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.003G071400.1 pacid=42786758 polypeptide=Potri.003G071400.1.p locus=Potri.003G071400 ID=Potri.003G071400.1.v4.1 annot-version=v4.1 ATGGCTAATTCATCAAGGTCCAGTTTTCATTTGTTGCTCGTATACACGAGCCTTGTCATCCCTTCAAGTTGCTATAGTCAGCGTCCATCGTCTCCAAGTG ACCATGTAGCGATGTTCATCTTTGGAGATTCACTGTTTGATGCTGGTAACAACAACTACCTAAAGAGTGCTGTTGGACGAGCAAATTTCTGGCCATACGG TGAGACATTCTTTAAGCATCCTACTGGGAGATTTTCCGATGGTAGAATAATTCCTGATTTTATCGCTGAGTATCTAAACTTGCCATTAATTCCACCATAT CTACAACCTGGAAACCATCGGTATCTAGCTGGGGTCAACTTTGCATCAGCAGGAGCTGGTGCTTTGGCAGAAACTTACAAGGGATTTGTAATAGACCTTA AAACTCAGCTAAGTTATTTCAGGAAAGTGAAGCAGCAGCTCAGAGAAGAAAGAGGCGACACAGAAACTAAAACTTTTTTGTCTAAAGCTATTTACTTGTT CAGCATAGGAAGCAATGACTACGTAGAACCTTTCTCCACAAACTTCAGTGCATTTCATTCCTCCTCCAAAAAAGATTATGTTGGGATGGTAGTTGGTAAC CTGACAACTGTGGTCAAGGAAATATACAAGAACGGAGGAAGGAAATTTGGATTCCTAAATGTGGAGCCTATGGGTTGTTTTCCATACGCGAGAGCAGTTC TACAAAACAACACTCGTGGTTGCGTAGATGAACTTACAGTGCTAGCTAAACTACACAACAGAGCACTGACTAAAGCCTTGGAAGAGCTTATGGGGCAGCT AAAAGGATTCAAGTATTCAAACTTTGATTTCCATGGCTCACTAAGTGAAAGAATTAACAATCCTTCAAAATATGGTTTCAAGGAGGGTAAAGTGGCATGT TGTGGCACTGGCCCGTACAGGGGAATCCTGAGCTGTGGTGGAAAGAGAACAATAAAAGAGTACCAATTGTGTGACGATGCTAGCGAGCATTTATTCTTTG ATGGTTCTCATCCAACCGAAAAGGCCAACTATCAATTTGCAAAATTAATGTGGACGGGAAGTCCTTCTGTCACCGGGCCTTGCAATCTTCAAACATTAGT TCAGGAATAG
AA sequence Show only first row Show all	>Potri.003G071400.1 pacid=42786758 polypeptide=Potri.003G071400.1.p locus=Potri.003G071400 ID=Potri.003G071400.1.v4.1 annot-version=v4.1 MANSSRSSFHLLLVYTSLVIPSSCYSQRPSSPSDHVAMFIFGDSLFDAGNNNYLKSAVGRANFWPYGETFFKHPTGRFSDGRIIPDFIAEYLNLPLIPPY LQPGNHRYLAGVNFASAGAGALAETYKGFVIDLKTQLSYFRKVKQQLREERGDTETKTFLSKAIYLFSIGSNDYVEPFSTNFSAFHSSSKKDYVGMVVGN LTTVVKEIYKNGGRKFGFLNVEPMGCFPYARAVLQNNTRGCVDELTVLAKLHNRALTKALEELMGQLKGFKYSNFDFHGSLSERINNPSKYGFKEGKVAC CGTGPYRGILSCGGKRTIKEYQLCDDASEHLFFDGSHPTEKANYQFAKLMWTGSPSVTGPCNLQTLVQE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40990		GLIP1	GDSL lipase 1 (.1)		Potri.003G071400 [exp]	0	1
AT5G12380		ANNAT8	annexin 8 (.1)		Potri.003G200700 [exp]	5.09	0.9283	ANN1.1
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Potri.006G227400 [exp]	13.26	0.9178	Pt-CWINV.1
AT3G50740		UGT72E1	UDP-glucosyl transferase 72E1 ...		Potri.007G030400 [exp]	16.73	0.9123
AT1G51190	AP2_ERF	PLT2	PLETHORA 2, Integrase-type DNA...		Potri.001G018400 [exp]	17.57	0.9174	RAP21
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Potri.007G122100 [exp]	23.21	0.9110	SEPA1.1
AT2G48130			Bifunctional inhibitor/lipid-t...		Potri.005G211900 [exp]	28.98	0.9110
AT2G01170		BAT1	bidirectional amino acid trans...		Potri.007G100700 [exp]	29.74	0.9121
AT1G02360			Chitinase family protein (.1)		Potri.002G186500 [exp]	30.88	0.9098
AT1G68850			Peroxidase superfamily protein...		Potri.008G110600 [exp]	32.12	0.9102
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Potri.006G121900 [exp]	32.71	0.9094

Compare expression of checked genes

Potri.003G071400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.