Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53920 437 / 2e-153 GLIP5 GDSL-motif lipase 5 (.1) AT5G40990 358 / 9e-123 GLIP1 GDSL lipase 1 (.1) AT1G53940 357 / 3e-121 GLIP2 GDSL-motif lipase 2 (.1) AT3G14225 340 / 2e-115 GLIP4, EMB1474 GDSL-motif lipase 4 (.1) AT1G53990 335 / 1e-113 GLIP3 GDSL-motif lipase 3 (.1) AT5G45960 204 / 3e-62 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G54030 201 / 1e-60 GOLD36, MVP1 MODIFIED VACUOLE PHENOTYPE 1, GOLGI DEFECTS 36, GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45950 197 / 4e-60 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G26790 187 / 4e-56 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G71120 184 / 6e-55 GLIP6 GDSL-motif lipase/hydrolase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G071400 [exp] 421 / 3e-147 AT5G40990 387 / 1e-133 GDSL lipase 1 (.1) Potri.013G065100 [exp] 400 / 2e-139 AT5G40990 375 / 4e-129 GDSL lipase 1 (.1) Potri.017G134701 [exp] 355 / 1e-121 AT5G40990 359 / 4e-123 GDSL lipase 1 (.1) Potri.017G134601 [exp] 347 / 2e-118 AT5G40990 358 / 8e-123 GDSL lipase 1 (.1) Potri.017G136601 [exp] 345 / 3e-117 AT5G40990 337 / 8e-114 GDSL lipase 1 (.1) Potri.017G137000 [exp] 343 / 3e-116 AT5G40990 334 / 1e-112 GDSL lipase 1 (.1) Potri.018G063901 [exp] 342 / 3e-116 AT1G53920 302 / 4e-100 GDSL-motif lipase 5 (.1) Potri.017G136501 [exp] 342 / 8e-116 AT5G40990 334 / 1e-112 GDSL lipase 1 (.1) Potri.017G134350 [exp] 319 / 8e-108 AT5G40990 300 / 6e-100 GDSL lipase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013185 [exp] 442 / 2e-155 AT1G53920 447 / 3e-157 GDSL-motif lipase 5 (.1) Lus10037447 [exp] 424 / 3e-148 AT1G53920 430 / 4e-150 GDSL-motif lipase 5 (.1) Lus10013956 [exp] 188 / 2e-56 AT5G45950 432 / 6e-152 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10015162 [exp] 187 / 5e-56 AT2G04570 482 / 5e-172 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005279 [exp] 185 / 3e-55 AT5G45950 427 / 4e-150 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003722 [exp] 184 / 4e-55 AT5G42170 298 / 3e-99 SGNH hydrolase-type esterase superfamily protein (.1) Lus10031520 [exp] 186 / 5e-55 AT2G04570 473 / 3e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10006856 [exp] 185 / 5e-55 AT3G16370 507 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028423 [exp] 184 / 5e-55 AT3G14820 317 / 7e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10037598 [exp] 184 / 7e-55 AT3G16370 502 / 6e-180 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.003G071500.1 pacid=42785037 polypeptide=Potri.003G071500.1.p locus=Potri.003G071500 ID=Potri.003G071500.1.v4.1 annot-version=v4.1 ATGGCGAAGATAAGTCAACACTTCTTGTATGCTTTTCTTCTTCACGCGGTCCTCATTTCAGCAAGATGCCAAGCAACATCCGAGCATCCAAAGAAACATG TTGTTGCCTTCTTCATCTTCGGTGATTCATTTTTAGATGCCGGCAACAACAACTATATCAACACCACAACTCTTGACCAAGCAAACTTCTGGCCTTATGG AGAAACCTTCTTCAAGTTCCCCACCGGTCGTTTCTCTGACGGTCGTCTGGCACCGGATTTTATTGCCAAATATGCAAATCTTCCATTTATCCCACCTTTT CTACAACCTGGCATTGATCAATATTACCATGGAGTCAATTTTGCATCTGCCGGAGCCGGTGCTTTAGTTGAAACATATAAAGGGGATGTGATTGATCTTA GAACACAGTTGAGATATTACAAGAAGGTGGAGAAGTGGTTGAGACATAAGCTAGGCAATGATGAAGCCAAGATGACAATATCAAAAGCTGTATACTTGTT TAGCATTGGAAGCAATGATTACATGAGCCCTTTCTTGACCAATTCCACTATTCTAAAGTCATACACAGACTCCAAATACGTTGGGATGGTCATCGGCAAC TTGACAACAGTGATTAAAGAGATATACAAGTTGGGGGGCAGAAAATTTGCATTTATCAATGTCCCACCACTGGGCTGTCTGCCCACAATCAGGAATAGCA ACGGTAGCTGCCTGAAAGAAACTTCATTGCTTTCAACATTACACAACAAAGCTCTCTCCAAGCTCCTCCGTGAACTGGAGGAGCAATTGAAGGGTTTCAA ACACTCACACTTTGACCTCAACAGCTTTCTTGAACAAAGAATCAATCATCCTTCTCAATTTGGTTTCAAGGAAGGGAAATCAGCATGCTGTGGAACTGGG CCATTTCGAGGAGTTTTTAGCTGTGGAGGAAAGAGACTAGTGAAGCAGTTCGAGTTATGTGAAAATCCTAATGAATACGTGTTTTGGGACTCTATTCATC TCACTGAAAAGGCTTACAGACAATTGGCAGATCAAATGTGGGGTGGAGGGGTTGGCCACCCTCATGTTCTTGGGCCTTATAATCTAATGAATCTATTCCA AACAGAAACTTAG
AA sequence Show only first row Show all	>Potri.003G071500.1 pacid=42785037 polypeptide=Potri.003G071500.1.p locus=Potri.003G071500 ID=Potri.003G071500.1.v4.1 annot-version=v4.1 MAKISQHFLYAFLLHAVLISARCQATSEHPKKHVVAFFIFGDSFLDAGNNNYINTTTLDQANFWPYGETFFKFPTGRFSDGRLAPDFIAKYANLPFIPPF LQPGIDQYYHGVNFASAGAGALVETYKGDVIDLRTQLRYYKKVEKWLRHKLGNDEAKMTISKAVYLFSIGSNDYMSPFLTNSTILKSYTDSKYVGMVIGN LTTVIKEIYKLGGRKFAFINVPPLGCLPTIRNSNGSCLKETSLLSTLHNKALSKLLRELEEQLKGFKHSHFDLNSFLEQRINHPSQFGFKEGKSACCGTG PFRGVFSCGGKRLVKQFELCENPNEYVFWDSIHLTEKAYRQLADQMWGGGVGHPHVLGPYNLMNLFQTET

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53920		GLIP5	GDSL-motif lipase 5 (.1)		Potri.003G071500 [exp]	0	1
AT1G29270			unknown protein		Potri.011G070000 [exp]	2.00	0.8453
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Potri.003G159700 [exp]	3.46	0.8450	EXGT.2
AT5G65160		TPR14	tetratricopeptide repeat 14, t...		Potri.007G091200 [exp]	6.78	0.8556
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Potri.006G010500 [exp]	10.19	0.8396	Pt-GDI1.1
AT1G10550		XTH33, XET	xyloglucan:xyloglucosyl transf...		Potri.014G115000 [exp]	15.49	0.8328	Pt-XTH33.1
AT1G70090		GATL9, LGT8	GALACTURONOSYLTRANSFERASE-LIKE...		Potri.010G038300 [exp]	22.64	0.7710
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.001G065900 [exp]	31.12	0.7965
AT1G24764		ATMAP70-2	microtubule-associated protein...		Potri.006G039200 [exp]	36.66	0.8177
					Potri.010G031700 [exp]	44.88	0.7865
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Potri.004G218500 [exp]	60.86	0.8041	MLO4.1

Compare expression of checked genes

Potri.003G071500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.