Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53900 587 / 0 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) AT1G53880 587 / 0 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) AT1G72340 581 / 0 NagB/RpiA/CoA transferase-like superfamily protein (.1) AT3G07300 94 / 7e-21 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) AT2G44070 84 / 6e-18 NagB/RpiA/CoA transferase-like superfamily protein (.1) AT5G38640 79 / 1e-15 NagB/RpiA/CoA transferase-like superfamily protein (.1) AT1G48970 79 / 2e-15 NagB/RpiA/CoA transferase-like superfamily protein (.1) AT2G05830 67 / 5e-12 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G163300 [exp] 695 / 0 AT1G53900 589 / 0.0 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) Potri.001G026100 [exp] 96 / 1e-21 AT3G07300 632 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Potri.003G199301 [exp] 96 / 2e-21 AT3G07300 595 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Potri.T126106 [exp] 96 / 2e-21 AT3G07300 595 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Potri.010G068600 [exp] 86 / 3e-18 AT3G07300 482 / 3e-170 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Potri.004G103700 [exp] 86 / 6e-18 AT5G38640 792 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.017G111800 [exp] 78 / 2e-15 AT5G38640 775 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.012G059300 [exp] 78 / 3e-15 AT5G38640 693 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.006G219900 [exp] 70 / 6e-13 AT2G05830 526 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003938 [exp] 596 / 0 AT1G53900 597 / 0.0 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) Lus10037451 [exp] 510 / 0 AT1G53900 479 / 6e-172 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) Lus10037452 [exp] 98 / 9e-25 AT1G53900 108 / 1e-28 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) Lus10002762 [exp] 92 / 2e-20 AT3G07300 624 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Lus10016349 [exp] 92 / 5e-20 AT3G07300 624 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Lus10027234 [exp] 82 / 2e-16 AT5G38640 704 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1) Lus10038944 [exp] 82 / 2e-16 AT5G38640 694 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1) Lus10001970 [exp] 67 / 5e-12 AT2G05830 538 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3.4) Lus10008417 [exp] 66 / 1e-11 AT2G05830 543 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0246 [poplar] [flax] ISOCOT_Fold PF01008 [poplar] [flax] IF-2B Initiation factor 2 subunit family
Representative CDS sequence Show only first row Show all	>Potri.003G072100.1 pacid=42786091 polypeptide=Potri.003G072100.1.p locus=Potri.003G072100 ID=Potri.003G072100.1.v4.1 annot-version=v4.1 ATGTGGTGGAGATCGGCCTCTTTCATCCTGGACAAACAACAAAGCGACACCGTTCCCCGTCAACGCAACCCCCCCGACACTCTCACTCTCCCATCCCCAC CACCTCTCTCCATGGCCGATGCTCTCCAAAACCCCAACCCCCAAAACAACATCTCCGCTTATTACCAGACACGCGCCGCCCACAACGCCGTGGTCACCAG CGACTGGCTCGCCCAGGCCCAGGCTGCTATCGGCCATGACCTAGACGACGCCCCGGAGACTAATGTTGCAACTGTCGCCGGAAAGCCGTTTAGTGTGATT GATGAGTTCAATAGCTGGAGGAAGCAGCCTGAGTTGGCGGAGGCTGTGGCGGCGATCAGGGCGCTTGCCGCCGTTATCAGGAATTGTCAGGCTACTACTA TGATGGAGCTTGAAATTGAGCTTAAAAAGGCCTCTGATTCGCTTAAATCATGGGACACAACCTCGATATCTTTGACAGCAGGTTGTGATCTGTTCATGCG ATATGTGACTAGAACTTCTGCTTTAGAATATGAGGACTTTAATTCAGCTAAATCTCGGTTGATCGAGCGTGCGGAGAAGTTTGGGGAGATATCTTACAAG GCACGTAGGATCATTGCCATGCTTAGCCAAGATTTTATCTTTGATGGTTGCACGATTTTGGTGCATGGTTTCTCCAGAGTTGTGTTCGAAGTTCTGAAAA CAGCAGCTCAAAGTAAAAAACTCTTCAGAGTTTTCTGCACAGAGGGAAGGCCTGATAGGACAGGCTTACGGTTGTCCAATGAGCTGGCCAAGCTTGATGT TCCTGTGAAACTCCTTATAGACTCTGCTGTGGCATATACTATGGATGAGATAGACATGGTATTTGTCGGAGCAGATGGAGTGGTTGAAAGTGGAGGTATA ATCAACATGATGGGAACATTCCAGATTGCATTGGTTGCACACAGCATGAATAAGCCTGTTTATGTGGCTGCTGAAAGCTACAAGTTTGCTCGTCTCTATC CATTGGACCAGAAAGACATGGTTCCTGCTTTACACCCGATTGATTTTGGGGTGCCCATTCCATCAAAGGTTGAGGTTGAAACATCTGCTCGGGACTATAC TCCTCCGCAGTATCTTACTTTACTCTTCACTGATCTTGGTGTACTGACTCCATCTGTAGTCAGTGATGAACTCATTCAGCTATACTTGTAG
AA sequence Show only first row Show all	>Potri.003G072100.1 pacid=42786091 polypeptide=Potri.003G072100.1.p locus=Potri.003G072100 ID=Potri.003G072100.1.v4.1 annot-version=v4.1 MWWRSASFILDKQQSDTVPRQRNPPDTLTLPSPPPLSMADALQNPNPQNNISAYYQTRAAHNAVVTSDWLAQAQAAIGHDLDDAPETNVATVAGKPFSVI DEFNSWRKQPELAEAVAAIRALAAVIRNCQATTMMELEIELKKASDSLKSWDTTSISLTAGCDLFMRYVTRTSALEYEDFNSAKSRLIERAEKFGEISYK ARRIIAMLSQDFIFDGCTILVHGFSRVVFEVLKTAAQSKKLFRVFCTEGRPDRTGLRLSNELAKLDVPVKLLIDSAVAYTMDEIDMVFVGADGVVESGGI INMMGTFQIALVAHSMNKPVYVAAESYKFARLYPLDQKDMVPALHPIDFGVPIPSKVEVETSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLYL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53900			Eukaryotic translation initiat...		Potri.003G072100 [exp]	0	1
AT3G52905			Polynucleotidyl transferase, r...		Potri.001G104800 [exp]	6.24	0.8180
AT4G26965			NADH:ubiquinone oxidoreductase...		Potri.001G109600 [exp]	7.14	0.7829
AT3G13160			Tetratricopeptide repeat (TPR)...		Potri.004G030000 [exp]	8.24	0.8342
AT3G15930			Pentatricopeptide repeat (PPR)...		Potri.001G464200 [exp]	14.89	0.8006
AT5G45590			Ribosomal protein L35 (.1)		Potri.003G099900 [exp]	15.58	0.7966
AT3G29230			Tetratricopeptide repeat (TPR)...		Potri.004G125500 [exp]	19.79	0.7971
AT5G66180			S-adenosyl-L-methionine-depend...		Potri.007G056800 [exp]	20.78	0.7745
AT5G07900			Mitochondrial transcription te...		Potri.003G189300 [exp]	22.22	0.7783
AT2G36730			Pentatricopeptide repeat (PPR)...		Potri.017G083900 [exp]	22.62	0.8097
AT3G47180			RING/U-box superfamily protein...		Potri.002G080900 [exp]	23.66	0.8089

Compare expression of checked genes

Potri.003G072100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.