Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72330 838 / 0 ALAAT2 alanine aminotransferase 2 (.1.2.3) AT1G17290 831 / 0 ALAAT1 alanine aminotransferas (.1) AT1G23310 486 / 9e-169 GGAT1, AOAT1, GGT1 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 1, ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 1, glutamate:glyoxylate aminotransferase (.1.2) AT1G70580 483 / 3e-167 GGT2, AOAT2 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) AT2G20610 83 / 9e-17 RTY1, RTY, HLS3, ALF1, SUR1 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) AT4G28420 81 / 3e-16 Tyrosine transaminase family protein (.1.2) AT5G36160 79 / 2e-15 Tyrosine transaminase family protein (.1) AT5G51690 79 / 2e-15 ACS12 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) AT4G28410 78 / 3e-15 Tyrosine transaminase family protein (.1) AT4G11280 78 / 3e-15 ATACS6, ACS6 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G162800 [exp] 894 / 0 AT1G17290 828 / 0.0 alanine aminotransferas (.1) Potri.008G187400 [exp] 477 / 4e-165 AT1G70580 895 / 0.0 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) Potri.010G045100 [exp] 473 / 2e-163 AT1G70580 895 / 0.0 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) Potri.017G014100 [exp] 86 / 7e-18 AT5G53970 528 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.007G137950 [exp] 80 / 7e-16 AT5G53970 504 / 2e-178 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G014200 [exp] 79 / 2e-15 AT5G36160 540 / 0.0 Tyrosine transaminase family protein (.1) Potri.018G067000 [exp] 77 / 7e-15 AT4G26200 676 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Potri.006G149600 [exp] 77 / 7e-15 AT4G26200 651 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Potri.017G013900 [exp] 77 / 7e-15 AT5G53970 521 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037455 [exp] 842 / 0 AT1G72330 893 / 0.0 alanine aminotransferase 2 (.1.2.3) Lus10003935 [exp] 838 / 0 AT1G72330 880 / 0.0 alanine aminotransferase 2 (.1.2.3) Lus10036850 [exp] 472 / 9e-163 AT1G70580 872 / 0.0 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) Lus10006203 [exp] 469 / 5e-162 AT1G70580 868 / 0.0 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) Lus10026692 [exp] 467 / 3e-161 AT1G70580 878 / 0.0 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) Lus10004623 [exp] 456 / 2e-156 AT1G70580 865 / 0.0 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) Lus10033659 [exp] 94 / 3e-20 AT5G36160 481 / 3e-169 Tyrosine transaminase family protein (.1) Lus10032654 [exp] 90 / 3e-19 AT5G53970 423 / 2e-147 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10017703 [exp] 91 / 4e-19 AT2G20610 486 / 1e-170 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10017934 [exp] 82 / 2e-16 AT5G53970 619 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00155 [poplar] [flax] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Potri.003G072600.1 pacid=42786344 polypeptide=Potri.003G072600.1.p locus=Potri.003G072600 ID=Potri.003G072600.1.v4.1 annot-version=v4.1 ATGCGGAGATCCGTTATTGGGTCAGCTAAAGCCCTTTCAAACCGCTCCTGTCAAAATCATTGGAACGTGCTGCTGCTGCGTCCTTTAGCCTCTTCTCCTT CACGTTTCCTGTCTTCTACCTCCGTTCTTGATTCTCCCCCCCCTCCTCCTTCATCTATGCTTCCTGTTTCTCTTGATAACATTAATCCCAAGGTTTTAAA ATGTGAATATGCTGTCCGTGGCGAGATTGTCACCCTTGCACAGGCGTTACAAGAAGAGTTAAAGTCTAAGCCAGGCTCCCACCCCTTTGATGAGATACTT TACTGCAATATTGGAAATCCTCAGTCTCTTGGTCAGCAGCCTATCACCTTTTTCCGTGAGGTTCTTGCATTATGCGACCATCCTTCCATTTTGGACAGAA GTGAAACTCAGGGTTTGTTCAGTGCTGATGCCATAGAGAGAGCTTGGCAGATTCTTGATCAAATTCCTGGAAGGGCCACTGGTGCTTATAGTCACAGCCA GGGAATCAAAGGACTGCGTGATACAATTGCTGCTGGAATTGAAGCCCGTGATGGCTTTCCTGCTGATCCAAATGATATTTTCTTGACAGATGGTGCAAGT CCAGCGGTCCACATGATGATGCAGTTACTGATACGATCAGAGAAAGATGGCATACTTTGTCCCATTCCTCAGTATCCCCTGTACTCTGCTTCAATTGCTC TCCATGGTGGTGCTCTGGTTCCCTACTATCTTGATGAAGCAACTGGGTGGGGCTTGGAAGTTTCTGAGCTTAAGAAGCAGTTGGCAGATGCAAAGTCCAA GGGAATCACCCCTAGGGCCCTGGTTGTGATAAATCCAGGAAACCCAACAGGGCAGGTTCTTGCAGAGGATAATCAGCGGGGGATTGTGGAGTTTTGCAAG CAAGAAGGTCTTGTCCTTCTTGCAGATGAGGTTTATCAGGAAAATGTTTATGTTCCTGAGAAAAAGTTCGACTCATTTAAGAAGGTTGCTCGGTCTATGG GATATGGCGAAAAGGATATATCTTTAGTATCTTTTCAGTCTGTCTCCAAAGGTTACTATGGAGAGTGTGGAAAGAGAGGAGGTTACATGGAAGTCACTGG GTTTGGTCCTGAAATAAGAGAGCAAATATACAAAGTTGCATCTGTGAATCTATGTTCCAACATTTCTGGTCAAATTCTTGCAAGTCTCGTCATGAGCCCA CCTAAGGTCGGAGATGAATCATATGAATCATACTCTGCCGAAAAAGATGGAATCCTCTCATCTTTAGCGAGACGTGCAAAGACGCTGGAAGACGCATTCA ATAATCTAGAGGGTGTAACTTGCAACAAAGCAGAAGGGGCAATGTATCTCTTCCCCTGCATCTGCTTGCCTGAAAAGGCAATTAAGGCTGCCGAAGCTGC AAAAACAGCTCCAGATAACTTCTATTGTCGCCGTCTACTCAATGCCACTGGAATTGTTTTTGTTCCTGGTTCTGGCTTTGGGCAGCTTCCGGGCACTTGG CATTTTAGGTGCACCATACTACCTCAAGAAGATAAGATTCCAGCAGTTGTCTCCCGTCTCACAGAGTTCCACAAGAGTTTCATGGATGAGTTTCGCGATT GA
AA sequence Show only first row Show all	>Potri.003G072600.1 pacid=42786344 polypeptide=Potri.003G072600.1.p locus=Potri.003G072600 ID=Potri.003G072600.1.v4.1 annot-version=v4.1 MRRSVIGSAKALSNRSCQNHWNVLLLRPLASSPSRFLSSTSVLDSPPPPPSSMLPVSLDNINPKVLKCEYAVRGEIVTLAQALQEELKSKPGSHPFDEIL YCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADAIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS PAVHMMMQLLIRSEKDGILCPIPQYPLYSASIALHGGALVPYYLDEATGWGLEVSELKKQLADAKSKGITPRALVVINPGNPTGQVLAEDNQRGIVEFCK QEGLVLLADEVYQENVYVPEKKFDSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFGPEIREQIYKVASVNLCSNISGQILASLVMSP PKVGDESYESYSAEKDGILSSLARRAKTLEDAFNNLEGVTCNKAEGAMYLFPCICLPEKAIKAAEAAKTAPDNFYCRRLLNATGIVFVPGSGFGQLPGTW HFRCTILPQEDKIPAVVSRLTEFHKSFMDEFRD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72330		ALAAT2	alanine aminotransferase 2 (.1...		Potri.003G072600 [exp]	0	1
AT5G44070		ATPCS1, ARA8, C...	CADMIUM SENSITIVE 1, ARABIDOPS...		Potri.014G195800 [exp]	7.07	0.7397	CAD1.1
AT1G64750		DSS1(I), ATDSS1...	deletion of SUV3 suppressor 1(...		Potri.017G066900 [exp]	9.89	0.7143
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Potri.009G022050 [exp]	10.48	0.7194
AT4G26910			Dihydrolipoamide succinyltrans...		Potri.001G357000 [exp]	15.49	0.7759
AT5G64460			Phosphoglycerate mutase family...		Potri.002G108500 [exp]	21.67	0.7724
AT5G24240			Phosphatidylinositol 3- and 4-...		Potri.015G013600 [exp]	27.74	0.7305
AT4G08550			electron carriers;protein disu...		Potri.002G091200 [exp]	29.39	0.7313
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.014G019600 [exp]	49.30	0.7153
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Potri.003G079200 [exp]	49.31	0.6711	ACX1.1
AT3G21865		PEX22	peroxin 22 (.1)		Potri.007G121600 [exp]	66.34	0.6924

Compare expression of checked genes

Potri.003G072600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.