Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-MPE3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53840 723 / 0 ATPME1 pectin methylesterase 1 (.1) AT3G14300 601 / 0 ATPMEPCRC, ATPME26 A. THALIANA PECTIN METHYLESTERASE 26, pectinesterase family protein (.1) AT5G04960 485 / 4e-166 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G10710 457 / 2e-155 RHS12 root hair specific 12 (.1) AT5G53370 409 / 2e-136 ATPMEPCRF pectin methylesterase PCR fragment F (.1) AT1G53830 395 / 6e-131 ATPME2 pectin methylesterase 2 (.1) AT3G14310 393 / 6e-130 ATPME3 pectin methylesterase 3 (.1) AT3G43270 389 / 5e-129 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G27870 388 / 2e-126 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G05610 385 / 9e-126 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G162700 [exp] 905 / 0 AT1G53840 659 / 0.0 pectin methylesterase 1 (.1) Potri.006G134800 [exp] 604 / 0 AT1G53840 505 / 1e-173 pectin methylesterase 1 (.1) Potri.010G247600 [exp] 501 / 2e-172 AT3G10710 609 / 0.0 root hair specific 12 (.1) Potri.008G011200 [exp] 491 / 1e-168 AT3G10710 621 / 0.0 root hair specific 12 (.1) Potri.001G162400 [exp] 431 / 1e-144 AT3G14310 792 / 0.0 pectin methylesterase 3 (.1) Potri.003G072800 [exp] 419 / 4e-140 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1) Potri.012G014500 [exp] 410 / 2e-136 AT3G49220 789 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.011G135000 [exp] 408 / 2e-136 AT1G11580 560 / 0.0 methylesterase PCR A (.1) Potri.018G051400 [exp] 407 / 7e-136 AT3G14310 708 / 0.0 pectin methylesterase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003934 [exp] 766 / 0 AT3G14300 663 / 0.0 A. THALIANA PECTIN METHYLESTERASE 26, pectinesterase family protein (.1) Lus10037456 [exp] 530 / 0 AT1G53840 461 / 3e-160 pectin methylesterase 1 (.1) Lus10033399 [exp] 442 / 5e-149 AT3G10710 606 / 0.0 root hair specific 12 (.1) Lus10034859 [exp] 414 / 3e-138 AT3G10710 561 / 0.0 root hair specific 12 (.1) Lus10013344 [exp] 404 / 7e-135 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1) Lus10039927 [exp] 400 / 4e-132 AT2G26450 598 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10039314 [exp] 392 / 5e-130 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1) Lus10038917 [exp] 388 / 1e-128 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10003933 [exp] 387 / 8e-128 AT3G14310 733 / 0.0 pectin methylesterase 3 (.1) Lus10018103 [exp] 382 / 2e-125 AT3G49220 799 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF01095 [poplar] [flax] Pectinesterase Pectinesterase CL0268 [poplar] [flax] PF04043 [poplar] [flax] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.003G072700.1 pacid=42785895 polypeptide=Potri.003G072700.1.p locus=Potri.003G072700 ID=Potri.003G072700.1.v4.1 annot-version=v4.1 ATGGACTCTATCAATTCCTTCAAAGGATATGGTAAGGTGGATGAGGCAGAGCAGCAAGCCTTCCGGAAAAAATCGCGGAAGCGTCTGATCATTATCGTTG TCTCCTCCATTGTTCTTTTAGCTGTGATAATTGGTGCTGTTATAGGAGCTGTTGTGCACAAGCGAAACAACAAGTCATCATCCAACCCGGTTCCTCCTCC TGAGTTGACTCCAGCCACTTCACTGAAGGCGGTTTGCAGTGTGACCCAGTACCCAGCCTCATGTTTCTCCAGCATCTCTGCCCTTGAAACGGGTAACACC ACAGACCCAGAAGTGCTTTTCAAGCTCTCTTTACGTGTTGCAATGAATGAGCTCTCCAAGCTCAAAGACTACCCCGATAAGCTCATACAAAGCATTAAGG ACACAACCCTTCAAGGTGCTTTGAAAGTCTGCGCAACCGTGTTTGATGATGCTGTAGATAGACTGAATGACTCCATATCATCAATGGCTATTGGTGAAGG TGAACAGATTTTATCACCAGCTAAAATGAATGACTTGAAGACTTGGCTCAGTGCTACAATTACCGACCAAGAAACATGTTTAGATGCTCTACAAGAGTTG AGCACTACAAAGCATTTTAACCAGACACTTGTTGATCAAGTCAAGACAGCAATGGAGAACTCTACCGAGTTTGTTAGCAATAGTTTGGCCATTGTTGCAA AAATCCTGGGTTTGTTGTCTGATTTCAAAATCCCAATTCATAGAAGGTTACTTGGATTTGAAAGAAGCCATATTTCAGAATTTCCTCAATGGGTTAGTTT TGGAGATAGAAGGCTCCTTCAGGAGTCTAAACCGACGCCGAATGTCACAGTGGCGAAGGACGGTAGTGGGGACTGCGAGACCCTACGTGAGGCGGTAGGA AAAATTCCAAAGAAGAGTGAATCAAAATTCATCATACATGTTAAGGAAGGTGTATATGTGGAGAATGTGATTTTGGACAAAAGCAAGTGGAACGTGATGA TTTACGGTGAGGGGAAGGACAAGACAATTGTTTCAGGAAGTCTGAATTTTGTTGATGGAACACCCACCTTCTCTACTCCCACTTTCGCGGTTGCGGGCAA GGGGTTCTTTGCCAGAGATATGAAGTTCATTAACACGGCTGGGGCAGAAAAGCACCAGGCAGTGGCCTTCAGGTCCGGCTCGGACATGTCAGTATTTTAT CGGTGTGCATTTGATGCATTTCAGGACACGCTCTATGCTCACTCAAATCGACAATTCTACCGTGACTGTGACATTACCGGCACCATTGACTTCATTTTCG GCAATGCTGCGGTTGTCTTCCAAAATTGCAACATTCAGCCCAGGCAACCCTTAGCCAACCAATTCAACACCATCACAGCCCAGGGAAAGAAGGATCCTAA TCAAAACACTGGCATTTCAATTCAGAAGTGCAAGTTTTCTGCTTTCGATAATGTTACAGCACCAACTTACCTTGGTAGGCCTTGGAAGGATTATTCCACC ACTGTCATTATGCAGTCCGATATCGGGTCATTCTTGAGACCATTAGGTTGGATATCATGGGTCAGTGGTGTGGATCCACCGGCCACCATATTCTATGCAG AGTACCAGAACACTGGTTCTGGTGCTAATGTTGATGGAAGGGTTAAATGGACCGGTTACAAGCCAGCTCTTACGGTGGACGAGGCAGGGAAATTTGCTGT GGACTCCTTCATCCAAGGCAGCGAGTGGTTACCGAAAACCAGCGTGACATTCCAATCAATGTTATGA
AA sequence Show only first row Show all	>Potri.003G072700.1 pacid=42785895 polypeptide=Potri.003G072700.1.p locus=Potri.003G072700 ID=Potri.003G072700.1.v4.1 annot-version=v4.1 MDSINSFKGYGKVDEAEQQAFRKKSRKRLIIIVVSSIVLLAVIIGAVIGAVVHKRNNKSSSNPVPPPELTPATSLKAVCSVTQYPASCFSSISALETGNT TDPEVLFKLSLRVAMNELSKLKDYPDKLIQSIKDTTLQGALKVCATVFDDAVDRLNDSISSMAIGEGEQILSPAKMNDLKTWLSATITDQETCLDALQEL STTKHFNQTLVDQVKTAMENSTEFVSNSLAIVAKILGLLSDFKIPIHRRLLGFERSHISEFPQWVSFGDRRLLQESKPTPNVTVAKDGSGDCETLREAVG KIPKKSESKFIIHVKEGVYVENVILDKSKWNVMIYGEGKDKTIVSGSLNFVDGTPTFSTPTFAVAGKGFFARDMKFINTAGAEKHQAVAFRSGSDMSVFY RCAFDAFQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQNCNIQPRQPLANQFNTITAQGKKDPNQNTGISIQKCKFSAFDNVTAPTYLGRPWKDYST TVIMQSDIGSFLRPLGWISWVSGVDPPATIFYAEYQNTGSGANVDGRVKWTGYKPALTVDEAGKFAVDSFIQGSEWLPKTSVTFQSML

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53840		ATPME1	pectin methylesterase 1 (.1)		Potri.003G072700 [exp]	0	1	Pt-MPE3.1
AT5G20680		TBL16	TRICHOME BIREFRINGENCE-LIKE 16...		Potri.007G104300 [exp]	2.23	0.9092
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Potri.002G114200 [exp]	3.46	0.8595	Pt-ATCSLC12.1
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Potri.005G146900 [exp]	3.74	0.8834
AT1G13930			unknown protein		Potri.008G093200 [exp]	7.34	0.8341
AT3G54690		SETH3	Sugar isomerase (SIS) family p...		Potri.002G037400 [exp]	12.04	0.8022
AT3G24630			unknown protein		Potri.018G082300 [exp]	13.26	0.8314
AT2G35980		NHL10, YLS9, AT...	YELLOW-LEAF-SPECIFIC GENE 9, A...		Potri.006G204300 [exp]	15.09	0.8423	B13.1
AT2G27080			Late embryogenesis abundant (L...		Potri.004G197600 [exp]	15.42	0.8394
AT1G27200			Domain of unknown function (DU...		Potri.008G192000 [exp]	16.43	0.8396
AT5G02220			unknown protein		Potri.016G100000 [exp]	17.32	0.8415

Compare expression of checked genes

Potri.003G072700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.