Plant FIBer expression Database

Potri.003G073000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G72320 885 / 0 APUM23 pumilio 23 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005913
[exp]
808 / 0 AT1G72320 707 / 0.0 pumilio 23 (.1.2.3)
Lus10022388
[exp]
791 / 0 AT1G72320 673 / 0.0 pumilio 23 (.1.2.3)
Lus10038706
[exp]
46 / 0.0001 AT3G10360 928 / 0.0 pumilio 4 (.1)
PFAM info
Representative CDS sequence
>Potri.003G073000.1 pacid=42786606 polypeptide=Potri.003G073000.1.p locus=Potri.003G073000 ID=Potri.003G073000.1.v4.1 annot-version=v4.1
ATGGTTTCTGTTGGTTCAAAAGCTTTAGCGTCAAGAAGAGACAGGAGTTGTTGTAATTTGGTGGAAGATAACTTGATGGGCAGGGAGGATAAATCATATA
ATCAGGGCAGAAAGAAAAAGGGTATGAGCAGGAAGGCCAAGAATGGCAGTTTTGGTTTTGATGCTGATAATTCCAACAAAAGTGTTTCTGGGCGGGCGAC
TGATGGAACTGCGAAACCCAAAAAGTCATCAAAATATCAAAATACTTTCTCAGAGCCACAACCATCAATTGTAAGGAAACAGGTTGATCCTGAAACAACC
AAATATTTTTCAGAGATTGTAAATCTTTTTGAAAGTGACGGCGTTGATTTGGAGGAGCGTCCGGTCATATGTGGCAATGCTCTTGAAGAAGCTAGAGGCA
AAGAATTTGAGCTGGCAACTGATTATTATATAAGCCACACTCTGCAAATCCTACTTGAGGGCTGTAATGTGGACCATCTTTGCGATTTCCTCCAAGGCTG
TGCAAAGGTCTTTCCTTTAATTTCAATGGATAGGTCTGGTTCTCATGTTGCTGAGACAGCTCTCAAGTCTTTAGCTATGCATCTTCAGGACGATGAGGCT
TATTCTGTTATTGAAGAGACTCTAACTAATATATGCAAGGTAATTGTAGCTAGTCCTGTTGATATGATGTGTAACTGCTATGGATCTCATGTTTTCCGAA
GTCTTCTTTGTCTTTGTGGAGGAGTGCCATTAGATTCCCCAGTGTTCCATCGAGCAAAACCATCAATGATTCTGGCAGAGCGTTTGAACCTCAGCACTTC
TTCAGCCCCTGGGAACAATTTATCACATCATCATCAAGGATTTCCTGGTTTACTCAAGTTTCTTGTATCAGGAATGTTGAAATGTAGTGAAGAAGATGTG
AAATACCTTCTAGTTGATCAGTACAGCAGTTTGGTTTTCCAGACAGCTTTGAAGTTATTTGCTGGGCATGATCAACAGTTGTTACAGATAATTCCGGTCC
TACTTGACTGCAGAAAAGAAAATTTAACAGAAGGAAACTTCATAGAAATGACAGCGGTCGGTGACATTGTAAAGTTAATGAAAGAAGCTGCGTATAGCCA
CCTAATGGAGGTAATCCTGGCAGTGAGTCCTGAAAGCTTGTATGATGAAATGTTCACAAAGATTTTCAGGAAATCTCTATTTGAGCTTTCATCCCATCAT
TGTGGCAATTTTGTTGTTCAAGCCTTAGTTTCTCATGCAAGAGATCGCGAACAAATGGAGTTTATCTGGGAGAAACTTGGTCCAAAATTTAGGGATCTTC
TTGAAATGGGGAAGTCAGGAGTTATTGCATCTCTTATTGCTACAAGTCAAAGGCTTCACACACATGAACATGAGGTCTGTAAGGCCCTTGCTGATGCAGT
ATGTTTGCCAAATGAGTCTCCTAGATCTGTTGTTGATCGAATATTGTTTCTTGAAAGTTACTTTGCTTGTGTGGAAAAATCCAATTGGAAGTGGCCAAGT
GGTGCCAAGATCCATGTTATGGGCTCTCTGATTCTGCAGGCAGTTTTTAAATTTCAAAATCAACTCATACAGCCTTATATAATGAGTCTCACATCCATGG
AAGTTGACCATGTCCTTGAAGCTGCAAAAGATGTAGGGGGAGCTCGTACAATCGAAGCATTTCTAGATTCCGATGCGTCTGGAAAACAAAAGCACAGACT
AATTAATAAGTTACGGGGACATTTTGGAGAGCTCGCAATGCACTCGTCCGGTTCATTTACTGTTGAAAAGTGCTTTAGTGCCAGTAATTTGTCACTAAGA
GAAGCTATAGCATCAGACTTGTTATCCGTGCAAAGTGAGCTTCCCAAGACCAAGCAAGGCCCTTACCTCTTAAGAAAATTAGATATTGATGGATATGCTA
ACCGGCCTGATCAGTGGAGATCAAGACAGGCTTCGAAACAATCAACTTACAAAGAATTTTATGCTGCATTTGGATCTGGTGAGGTCAAGTCATCAAAAAG
TGACTCCTTCCTTGCTGATACTTCCAAGAGCACATCACTCGCAATAGGAGTAAAGAATGTGAGGAAAGAGATTGATCATCATTTGGCCTCATCAGAGAAA
TATGCAAAGCACGCTGTGGTTGATGATGTCATGAAAGTGAAAAACAAGAAGCACGAGAAGGGTCATGGTGGTGCCTCTGATGAGAAAGCAACAGTGAGTG
TAAATCAGAAACCTTTTCTGTCTGTTGACCTGAAGAAGAACAAACGACACGGACAAGAGGAGCGATCAAAAGCTTCAAGAAAGAAGTTAAAAGTTTGA
AA sequence
>Potri.003G073000.1 pacid=42786606 polypeptide=Potri.003G073000.1.p locus=Potri.003G073000 ID=Potri.003G073000.1.v4.1 annot-version=v4.1
MVSVGSKALASRRDRSCCNLVEDNLMGREDKSYNQGRKKKGMSRKAKNGSFGFDADNSNKSVSGRATDGTAKPKKSSKYQNTFSEPQPSIVRKQVDPETT
KYFSEIVNLFESDGVDLEERPVICGNALEEARGKEFELATDYYISHTLQILLEGCNVDHLCDFLQGCAKVFPLISMDRSGSHVAETALKSLAMHLQDDEA
YSVIEETLTNICKVIVASPVDMMCNCYGSHVFRSLLCLCGGVPLDSPVFHRAKPSMILAERLNLSTSSAPGNNLSHHHQGFPGLLKFLVSGMLKCSEEDV
KYLLVDQYSSLVFQTALKLFAGHDQQLLQIIPVLLDCRKENLTEGNFIEMTAVGDIVKLMKEAAYSHLMEVILAVSPESLYDEMFTKIFRKSLFELSSHH
CGNFVVQALVSHARDREQMEFIWEKLGPKFRDLLEMGKSGVIASLIATSQRLHTHEHEVCKALADAVCLPNESPRSVVDRILFLESYFACVEKSNWKWPS
GAKIHVMGSLILQAVFKFQNQLIQPYIMSLTSMEVDHVLEAAKDVGGARTIEAFLDSDASGKQKHRLINKLRGHFGELAMHSSGSFTVEKCFSASNLSLR
EAIASDLLSVQSELPKTKQGPYLLRKLDIDGYANRPDQWRSRQASKQSTYKEFYAAFGSGEVKSSKSDSFLADTSKSTSLAIGVKNVRKEIDHHLASSEK
YAKHAVVDDVMKVKNKKHEKGHGGASDEKATVSVNQKPFLSVDLKKNKRHGQEERSKASRKKLKV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G72320 APUM23 pumilio 23 (.1.2.3) Potri.003G073000
[exp]
0 1
AT4G31520 SDA1 family protein (.1) Potri.008G182900
[exp]
1.00 0.9277
AT1G06720 P-loop containing nucleoside t... Potri.017G017700
[exp]
2.00 0.8840
AT5G19820 EMB2734 embryo defective 2734, ARM rep... Potri.003G220100
[exp]
3.31 0.8561
AT1G15440 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN ... Potri.003G060500
[exp]
3.87 0.8828
AT3G16810 APUM24 pumilio 24 (.1) Potri.008G211400
[exp]
4.58 0.8683
AT2G21440 RNA-binding (RRM/RBD/RNP motif... Potri.009G120900
[exp]
4.89 0.8648
AT2G18220 Noc2p family (.1) Potri.001G012800
[exp]
5.09 0.8894
AT5G07900 Mitochondrial transcription te... Potri.003G190400
[exp]
6.24 0.8418
AT1G59760 AtMTR4 homolog of yeast MTR4, RNA hel... Potri.004G228700
[exp]
6.48 0.8853
AT4G04940 transducin family protein / WD... Potri.006G078900
[exp]
7.34 0.8777

Potri.003G073000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.