Plant FIBer expression Database

Potri.003G073200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G06840 46 / 2e-06 unknown protein
AT5G49170 45 / 4e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G162100
[exp]
280 / 8e-98 AT3G06840 53 / 7e-09 unknown protein
Potri.008G219500
[exp]
61 / 5e-12 AT3G06840 136 / 1e-40 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022872
[exp]
44 / 7e-06 AT5G49170 97 / 6e-26 unknown protein
Lus10006495
[exp]
43 / 3e-05 AT5G49170 118 / 9e-34 unknown protein
Lus10024954
[exp]
40 / 0.0003 AT5G49170 96 / 3e-25 unknown protein
Lus10036097
[exp]
39 / 0.0007 AT5G49170 97 / 2e-25 unknown protein
PFAM info
Representative CDS sequence
>Potri.003G073200.2 pacid=42785453 polypeptide=Potri.003G073200.2.p locus=Potri.003G073200 ID=Potri.003G073200.2.v4.1 annot-version=v4.1
ATGAATAACTCTCCAATGTACCAAAACTACGAGGCAAGCGAGCATGGTGCTTACGAGTTTGATCCTCAAGTTGACTTTACACAGTTCTTGGAAGAAGCAA
GACAACATGCAAGAGAAATGAATCTGCAGTCAATTTTACCACATCCAGAATCTGGAAAAGAAAGAGTGGAAGTAGAGAAAAAGAACAGGAGGTCCTGGAA
ACACTCTCTCCTCAAATGGTGGAATGCTGAGAAAAAGACCAAGCCTATCGTAGAAGCAACAAATAGCTCTAACATTTCAAATCCAAGAAAGGGTCATGTT
TCCGGTCCTATATATGGAAGTGGCAGAGGAGTTGAAATCAGGTATCGGCGACAAACATCTGGGCCGCTGACTAATCTTTTCAACCGTTCCAAGAGCGTGG
AGAACGAGAACCGTTATGTGTGTCTTGACCAACTTAACAATCCCCAAGGTGTCAAGGCCTATGGACCTGTTTACCTGGTAACTTAG
AA sequence
>Potri.003G073200.2 pacid=42785453 polypeptide=Potri.003G073200.2.p locus=Potri.003G073200 ID=Potri.003G073200.2.v4.1 annot-version=v4.1
MNNSPMYQNYEASEHGAYEFDPQVDFTQFLEEARQHAREMNLQSILPHPESGKERVEVEKKNRRSWKHSLLKWWNAEKKTKPIVEATNSSNISNPRKGHV
SGPIYGSGRGVEIRYRRQTSGPLTNLFNRSKSVENENRYVCLDQLNNPQGVKAYGPVYLVT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G06840 unknown protein Potri.003G073200
[exp]
0 1
AT1G50240 FU FUSED, Protein kinase family p... Potri.019G052500
[exp]
6.70 0.8914
AT1G20060 ATP binding microtubule motor ... Potri.013G068501
[exp]
7.07 0.8914
AT3G21770 Peroxidase superfamily protein... Potri.014G135580
[exp]
10.09 0.8690
AT1G26560 BGLU40 beta glucosidase 40 (.1) Potri.008G094200
[exp]
18.65 0.8718 Pt-HIUHASE.1
AT1G32090 early-responsive to dehydratio... Potri.001G133800
[exp]
21.42 0.8718
AT1G30760 FAD-binding Berberine family p... Potri.001G463550
[exp]
22.02 0.8092
AT3G12170 Chaperone DnaJ-domain superfam... Potri.006G056400
[exp]
25.13 0.8655 Pt-ATJ6.1
AT5G65160 TPR14 tetratricopeptide repeat 14, t... Potri.007G091200
[exp]
25.92 0.8550
AT3G07880 SCN1 SUPERCENTIPEDE1, Immunoglobuli... Potri.006G010500
[exp]
25.98 0.8408 Pt-GDI1.1
AT3G23670 PAKRP1L ,KINESI... phragmoplast-associated kinesi... Potri.014G149000
[exp]
27.11 0.8699 Pt-PAKRP1.1

Potri.003G073200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.