Plant FIBer expression Database

Potri.003G073400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G53800 426 / 2e-143 unknown protein
AT1G53250 105 / 1e-24 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G161900
[exp]
874 / 0 AT1G53800 433 / 8e-146 unknown protein
Potri.001G393700
[exp]
81 / 3e-16 AT1G53250 124 / 5e-32 unknown protein
Potri.011G112300
[exp]
81 / 6e-16 AT1G53250 139 / 2e-37 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037460
[exp]
423 / 5e-140 AT1G53800 387 / 3e-126 unknown protein
Lus10003930
[exp]
412 / 1e-137 AT1G53800 392 / 2e-130 unknown protein
Lus10028136
[exp]
88 / 2e-18 AT1G53250 139 / 1e-37 unknown protein
Lus10042840
[exp]
85 / 3e-17 AT1G53250 144 / 1e-38 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07460 NUMOD3 NUMOD3 motif
Representative CDS sequence
>Potri.003G073400.2 pacid=42785663 polypeptide=Potri.003G073400.2.p locus=Potri.003G073400 ID=Potri.003G073400.2.v4.1 annot-version=v4.1
ATGCCTTTACTAGATATTGCTACTGCTCAGGCTTCCTTGCAAAATCATCTGGGCCTACTAAGGGTTCAAACCAATGCTCATTGCAAAGTTTTTTCAAGTC
CATTTGCCTTTGGTGATGATAAGAGGCTGTTATCATTAGGGAAATCCATCAAATTCCGGAGAAAGATAAATGTTTTTGAGAGGAGTAAACTTCAGATAAA
AGCTGTTGCTACCGTTGAACCGAAGTCTTTGGTTCGCAAGGGAGATGGAAAAAGGAAAACAAGTCTTGAAAATGAACAACTTGCTGCCAATTCGGATACC
TTGCCTGCTCAAGTTGAGTCTTCAGGCGAAGACTCGATGGCATTAGATGACAAAGAAAACTTGAGACGGAAAAGGATTTCTAATGCAAATAAAGGGAACA
CGCCATGGAACAAAGGCAGGAAACATAGTCCTGAAACCCTTCAGAAGATTAGAGAAAGGACAAGGCTTGCAATGCAGGATCCTAAGATCAAGATGAAGCT
AGCCAACCTTGGACACGCGCAGAGCAAAGAGACAAGGGAGAAAATCGGGCATGGAGTTAGGTTGGGGTGGCAAAAACGCCGTGAGAAGCAGATGGTGCAG
GAAGGTTGTTATTTTGAATGGCAGAATTTAATTGCAGAGGCTTCAAGAAGAGGCTATACTGGTGAGGAAGAGCTGCAGTGGGATTCCTACAATATCTTAA
GGCAACAGCTTGAGGTTGAATGGGTGGAGAGCGTTCAACAAAGGAAAACATTGCCTAGGCCAAAAGGTAGCAAAAGAGCACCAAAATCCCTTGAACAAAG
AAGAAAAATATCAGAAGCCATAGCTGCGAAATGGGCTGATCCTGAATACCGCGAGAGAGTTTACTCTGGCCTTAGTAAATATCATGGCACGCTAGCTGGA
GCTGCAAGAAAGCCAAGGCGGATGCCAAGTGGTAGTTCACAGTCTGCTAGACGGGACTCCTCAAAGAGAAGAACCAGTGATACAGAAAAGGGGTATACTA
GAAGCCCAATCCAGCAGTTGAGGCGAAGAAGTAGGACACCATCATATAAGGATCCTTTGGCAAGTTCGAAGTTGGAGATGATAAAGAACATCAGAGCACA
AAGAATTGCCACAGAAACCAAGAAAAATGAAGCCATTGAACGAGCAAGGTCTTTAATTGTGGAAGCTGAGAAGGCTGCTAACGCTCTTGAAGCTGCTGCA
ATGAAGAGCCCCATTGCCCGAGCCTCCCTAACTGAAGCCAGAAAGCTTATTTCTGAAGCAATTCAATCAATTGAATCCCTGGATCAAGGGAATGGTGTAT
CCAGTGATAGCATATCTAATGTGAATGACAGATACCCATCTCTTGCACTAACTGAACTGGTTAGTGAGGATGAGAAGGAAATAAATGCAGGCAATGGAAG
CATGGATCAAGTAGAGTTGAGACAAGTAAATGGGACCATGATCATGGAAACAAGTAAAGATGAAGACCTCAATTTCAGTAATTTAGCCTTCCATGATTTA
CTGAATGGTCAGGGGGAACTTCTCCCTTTAAGCTCCAGTGCATATAGTTTGCCTTCCTCAACCATAGACCATTCGAGTTCAGGAAAGCAACCTGACCAAG
CGGAACCAAACGGGAGTCTCACGTCTGAAAAGATTAATCTACCAAATGGATCTAGAGTTCAGTATGTGGAAGAGGAGACACCTTCCAAATCAGTCGCTAC
TAAGAAATGGGTTCATGGAAGGCTTGTTGAAGGGACGGAAGGAGGTTGA
AA sequence
>Potri.003G073400.2 pacid=42785663 polypeptide=Potri.003G073400.2.p locus=Potri.003G073400 ID=Potri.003G073400.2.v4.1 annot-version=v4.1
MPLLDIATAQASLQNHLGLLRVQTNAHCKVFSSPFAFGDDKRLLSLGKSIKFRRKINVFERSKLQIKAVATVEPKSLVRKGDGKRKTSLENEQLAANSDT
LPAQVESSGEDSMALDDKENLRRKRISNANKGNTPWNKGRKHSPETLQKIRERTRLAMQDPKIKMKLANLGHAQSKETREKIGHGVRLGWQKRREKQMVQ
EGCYFEWQNLIAEASRRGYTGEEELQWDSYNILRQQLEVEWVESVQQRKTLPRPKGSKRAPKSLEQRRKISEAIAAKWADPEYRERVYSGLSKYHGTLAG
AARKPRRMPSGSSQSARRDSSKRRTSDTEKGYTRSPIQQLRRRSRTPSYKDPLASSKLEMIKNIRAQRIATETKKNEAIERARSLIVEAEKAANALEAAA
MKSPIARASLTEARKLISEAIQSIESLDQGNGVSSDSISNVNDRYPSLALTELVSEDEKEINAGNGSMDQVELRQVNGTMIMETSKDEDLNFSNLAFHDL
LNGQGELLPLSSSAYSLPSSTIDHSSSGKQPDQAEPNGSLTSEKINLPNGSRVQYVEEETPSKSVATKKWVHGRLVEGTEGG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G53800 unknown protein Potri.003G073400
[exp]
0 1
AT2G05310 unknown protein Potri.014G167300
[exp]
7.93 0.9526
AT5G57930 APO2, EMB1629 embryo defective 1629, ACCUMUL... Potri.006G183900
[exp]
8.60 0.9675
AT1G80030 Molecular chaperone Hsp40/DnaJ... Potri.003G031800
[exp]
9.38 0.9516
AT5G02830 Tetratricopeptide repeat (TPR)... Potri.006G132700
[exp]
9.79 0.9529
AT1G02475 Polyketide cyclase/dehydrase a... Potri.002G190300
[exp]
11.87 0.9344
AT1G08540 ATSIG1, SIG1, S... SIGMA FACTOR B, RNA POLYMERASE... Potri.013G070500
[exp]
15.09 0.9606 Pt-SIGB.2
AT3G16620 ATTOC120 ARABIDOPSIS THALIANA TRANSLOCO... Potri.009G131300
[exp]
15.49 0.9534
AT4G17300 ATNS1, NS1, OVA... ovule abortion 8, Class II ami... Potri.007G129800
[exp]
16.24 0.9474
AT5G52030 TraB family protein (.1.2) Potri.012G133900
[exp]
19.49 0.9498
AT3G29185 Domain of unknown function (DU... Potri.004G120900
[exp]
21.54 0.9568

Potri.003G073400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.