Plant FIBer expression Database

FUT13.1 (Potri.003G073500) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol FUT13.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G50420 694 / 0 O-fucosyltransferase family protein (.1)
AT1G17270 677 / 0 O-fucosyltransferase family protein (.1)
AT1G53770 650 / 0 O-fucosyltransferase family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003929
[exp]
701 / 0 AT1G17270 714 / 0.0 O-fucosyltransferase family protein (.1)
Lus10037461
[exp]
695 / 0 AT1G17270 717 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0113 GT-B PF10250 O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence
>Potri.003G073500.3 pacid=42787179 polypeptide=Potri.003G073500.3.p locus=Potri.003G073500 ID=Potri.003G073500.3.v4.1 annot-version=v4.1
ATGGAGAGAGATTCGTCAGACGAAGAGGACGATCGCGAGCACCTGATTGAACAAAACGATAGAAAACACCACCAGAACGGCGTCCCCCCCACCTCATCCC
CAACACGCCGACGATCCACAACATTCGATGTCGAATCTCGGATACGACACCGTTTCAACTTCAACAAGAGGTACTCTCTGTTTGCTGCTGCTATAATATT
CCTCCCTCTCTTCATCTTATTCCTTTCTTTCTCCACCGACATTCGGAATTTATTTTCGACCCATCTCAAGGTCGGGGATTCCCTTTCTATCCGAATGCGC
GAATCCGAATTACGCGCTCTTTATCTGTTGAAAAAGCAGCAGCTCTCTCTCTTCTCTCTCTGGAATTCCACTGGCAATTCCACATTGTTAGAAAAGGATC
TCAATTCCGTTTCCTTTGAAGATTTGAAATCTGCATTGCTAAAACAAATTTCTTTAAATAAAGAAATCCAACAGGTTTTACTAGCCCCTCATGAGTCAGG
GAATGTGTCGTCATCGTCATCAGATTTAGATTTTAGCAATGCCGGTGGTTTCGTCCAGAGATGTGAAAAAGTGGATCAGAGATTCGCTGACAGAAAAACA
ATAGAATGGAAACCGAAACCCAATAAATTTTTATTCGCGCTTTGTTTATCTGGGCAGATGAGTAACCATTTGATTTGTTTAGAGAAACACATGTTTTTCG
CTGCATTGTTGAATCGGGTCTTGGTTATCCCGAGCTCCAGGTTTGATTATCAGTATAATAGGGTTTTAGATATTGAGCATGTAAACGATTGTTTGGGGAG
GAAGGTTGTTGTTACCTTCGAGGAGTTTGTGGAGATCATGAAGAATAAACCCCATATTGATAGGTTCTTTTGTTATTTTTCTGATCCTACTCCATGTTAT
GTTGATGAAGAACATGTCAAGAAGCTGAAGGGGTTGGGGGTTTCTATGGGGAAACTTGAGTCCCCATGGAAGGAGGATATTAAGAAGCCAAGCAAGCTTA
CTGTTAAGGATGTTGAGGGGAAGTTTGTGAGTGATGATAATGTTATTGCTGTGGGAGATGTGTTTTTTGCTGATGTGGAGGAAGAGTGGATTATGCAGCC
AGGTGGTCCTATTGCTCATAAATGCAAGACTTTGATTGAACCAACTAGGATAATTATGCTTACTGCGCAGAGGTTTATTCAAACTTTCTTGGGGAGTAAC
TTCATTGCTCTCCATTTTCGGCGTCATGGATTTTTGAAGTTCTGCAATGCCAAGAAGCCAAGTTGCTTTTATCCTGTTCCCCAAGCGGCAGATTGCATTG
CTCGGGTGGTTGAAAGGGCCAATGCACCTGTGGTATATCTCTCCACAGATGCGGCAGAAAGTGAAACTGGTTTGCTGCAGTCACTAGTTGTGGTGAATGG
AAGGACTGTTCCACTTGTTACACGTCCTTCTCGTAATGCAGCTGAAAAGTGGGATGCTTTGTTATACAGACATGGCCTCCAGGAAGATGCTCAGGTGGAA
GCTATGCTGGATAAGACAATCTGTGCTATGTCCAGTGTGTTCATTGGAGCCTCTGGATCCACTTTCACTGAGGACATCTTTAGGCTGCGGAAGGGTTGGG
AATCAGCATCTTCATGCGATGAGTACCTCTGCCAAGGTGAATTACCTAATTACATTGCAGAAAATGAATGA
AA sequence
>Potri.003G073500.3 pacid=42787179 polypeptide=Potri.003G073500.3.p locus=Potri.003G073500 ID=Potri.003G073500.3.v4.1 annot-version=v4.1
MERDSSDEEDDREHLIEQNDRKHHQNGVPPTSSPTRRRSTTFDVESRIRHRFNFNKRYSLFAAAIIFLPLFILFLSFSTDIRNLFSTHLKVGDSLSIRMR
ESELRALYLLKKQQLSLFSLWNSTGNSTLLEKDLNSVSFEDLKSALLKQISLNKEIQQVLLAPHESGNVSSSSSDLDFSNAGGFVQRCEKVDQRFADRKT
IEWKPKPNKFLFALCLSGQMSNHLICLEKHMFFAALLNRVLVIPSSRFDYQYNRVLDIEHVNDCLGRKVVVTFEEFVEIMKNKPHIDRFFCYFSDPTPCY
VDEEHVKKLKGLGVSMGKLESPWKEDIKKPSKLTVKDVEGKFVSDDNVIAVGDVFFADVEEEWIMQPGGPIAHKCKTLIEPTRIIMLTAQRFIQTFLGSN
FIALHFRRHGFLKFCNAKKPSCFYPVPQAADCIARVVERANAPVVYLSTDAAESETGLLQSLVVVNGRTVPLVTRPSRNAAEKWDALLYRHGLQEDAQVE
AMLDKTICAMSSVFIGASGSTFTEDIFRLRKGWESASSCDEYLCQGELPNYIAENE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G50420 O-fucosyltransferase family pr... Potri.003G073500
[exp]
0 1 FUT13.1
AT5G15630 IRX6, COBL4 IRREGULAR XYLEM 6, COBRA-LIKE4... Potri.015G060100
[exp]
1.41 0.9397
AT3G61750 Cytochrome b561/ferric reducta... Potri.014G098700
[exp]
2.00 0.9528
AT5G03530 ATRABALPHA, AtR... ARABIDOPSIS THALIANA RAB GTPAS... Potri.010G229600
[exp]
3.46 0.9161 RAB1.1
AT2G40890 REF8, CYP98A3, ... cytochrome P450, family 98, su... Potri.006G033300
[exp]
5.19 0.9393 C3H1,CYP98.1
AT5G66420 unknown protein Potri.007G021000
[exp]
5.29 0.9138
AT2G03480 QUL2 QUASIMODO2 LIKE 2 (.1.2) Potri.008G094800
[exp]
5.65 0.9369
AT2G21520 Sec14p-like phosphatidylinosit... Potri.009G119500
[exp]
6.63 0.9055
AT5G66310 ATP binding microtubule motor ... Potri.007G014800
[exp]
6.70 0.9343
AT3G06035 Glycoprotein membrane precurso... Potri.008G195000
[exp]
8.36 0.8931
AT2G22125 POM2, CSI1 POM-POM 2, cellulose synthase-... Potri.005G080100
[exp]
9.16 0.8966

Potri.003G073500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.