Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53730 575 / 0 SRF6 STRUBBELIG-receptor family 6 (.1.2) AT3G14350 535 / 0 SRF7 STRUBBELIG-receptor family 7 (.1.2.3) AT4G22130 429 / 1e-142 SRF8 STRUBBELIG-receptor family 8 (.1.2) AT1G78980 399 / 5e-129 SRF5 STRUBBELIG-receptor family 5 (.1) AT3G13065 357 / 2e-113 SRF4 STRUBBELIG-receptor family 4 (.1) AT4G03390 333 / 5e-103 SRF3 STRUBBELIG-receptor family 3 (.1) AT2G20850 328 / 4e-101 SRF1 STRUBBELIG-receptor family 1 (.1) AT1G11130 304 / 2e-92 SRF9, SCM, SUB STRUBBELIG-RECEPTOR FAMILY 9, SCRAMBLED, Leucine-rich repeat protein kinase family protein (.1) AT3G20530 259 / 2e-79 Protein kinase superfamily protein (.1) AT5G06820 268 / 5e-79 SRF2 STRUBBELIG-receptor family 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G161600 [exp] 1012 / 0 AT1G53730 590 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Potri.014G001200 [exp] 448 / 4e-148 AT1G78980 817 / 0.0 STRUBBELIG-receptor family 5 (.1) Potri.004G005301 [exp] 447 / 2e-147 AT4G22130 906 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.011G010500 [exp] 443 / 6e-146 AT4G22130 916 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.007G002600 [exp] 429 / 7e-141 AT1G78980 499 / 1e-168 STRUBBELIG-receptor family 5 (.1) Potri.019G103900 [exp] 350 / 1e-109 AT4G03390 801 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.013G144600 [exp] 338 / 3e-105 AT4G03390 783 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.011G045600 [exp] 334 / 7e-104 AT4G03390 617 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.004G037000 [exp] 332 / 4e-103 AT4G03390 645 / 0.0 STRUBBELIG-receptor family 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003926 [exp] 659 / 0 AT1G53730 885 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Lus10037464 [exp] 655 / 0 AT1G53730 824 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Lus10015549 [exp] 436 / 3e-141 AT4G22130 972 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10020030 [exp] 413 / 2e-134 AT4G22130 947 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10033333 [exp] 410 / 2e-133 AT1G78980 803 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10034790 [exp] 396 / 2e-128 AT1G78980 768 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10035703 [exp] 368 / 8e-113 AT1G78980 746 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10039795 [exp] 338 / 2e-105 AT4G03390 892 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10018459 [exp] 332 / 1e-103 AT4G03390 594 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10031628 [exp] 333 / 4e-103 AT4G03390 870 / 0.0 STRUBBELIG-receptor family 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.003G073700.1 pacid=42786473 polypeptide=Potri.003G073700.1.p locus=Potri.003G073700 ID=Potri.003G073700.1.v4.1 annot-version=v4.1 ATGATGGAGAATTGGAGAGGAGTTGTGCTGCTAGTGTCACTCCTCATAGTCTGCATTTTCGGATGCGTCAATGGTGCAACAGATCCAAATGATGCCTCTG CTCTAAGGGTCATGTACATCAGTTTACAGTCACCAGGGCAGCTGACACAATGGAGCGCAAATGGTGATGATCCATGTGGGCAAAACTGGAAAGGCATTAT TTGCTCAGGCTCACGAGTTACAGAAATTAAATTACCCAGTCTTGGACTTCCTGGGTCATTGGGATACCAGCTCACCAGTTTGACAGCAGTAACAAACCTG GACATGAGTTATAATAATCTTGCAGGCAACATACCTGATCAACTTCCTCCAAACTTGCAGCAATTAAATCTTGCTAATAATCAATTTAGCGGAGGAATCC CGTATTCCATTTCTCAATTGCCTTCTCTTAAATACTTAAATCTTGGTCACAATCAGCTTCAGAATCAGTTGGGAGATGTGTTCGGACAACTTCCTTCTCT CTCTACATTGGATTTGTCATTCAACTCCCTGACAGGTGATCTACCTCAGAGTTTTAGCTCACTTTCAAGTATGACATCAATGTATTTGCAAAACAACCAA TTTACTGGCTCTATCAATGTCCTTGCAAGTCTTCCTCTTGAAAATCTGAATGTTGGAAATAATCGTTTTACAGGTTGGATCCCTAGCCAGTTAAACAGCA TTAATCTACAGAAGGACGGTAACAATTGGAACTCAGGACCTGCACCCCCTCCTCCACCTGGCACACCTCCAACCCCCAAAGGCCCGAGCCATAAATCTGG TGGCAATGCCAGCCCATCAGGCAGTGGTGCTGGTGGTGGCAGCAAGAAATCAGGACTAGGGGGTGGTGGCATAGCAGGAATAATCATATCCATATTTGTT GTTGGGGGGATAGTAGCATTCTTTTTGGTGAAGAGAAGATCCAGGAGGTCCTCCTTAGATCTAGAAATGCTTGATAATCAGCCATTTGCTCCTCTTTCTT CAACAAATGATATACAAGAAATGAAGTCTATGCAAAATTCTTCCATGGTAAATACAAAGACATTTGACACCCCAGCCTCAACAAATCTTAGACCTCCACC TATTGATCGTCACAAGTCATTTGACGAGGAGGAATTTTCACCAAAGCCCGTTGTTGTCAAGAAACCTGTTGCTGCTCCTGTAAACGTGACATCATACTCA GTAGCAGACCTGCAGATGGCTACTGGCAGCTTCAGTGTTGACCATCTTCTTGGTGAGGGGTCTTTTGGACGTGTTTATCGAGCTGAGTTTGATGATGGGA AGGTTGCTGTGAAGAAACTAGATTCAGGCATTCTGCCCAGCCATATGTCTGATGATTTTATGGAGATGGTTTCAAGCATTTCCTTGTTGCATCATCCAAA CGTGACAGAACTAGTGGGTTATTGTTCAGAGCATGGACAGCATCTGCTGGTCTATGAGTTCCATAAAAATGGCTCACTGCATGACTTCTTGCATCTATCA GATGAGTACAGCAAACCTTTGATATGGAATTCCCGTGTCAAGATAGCTCTGGGGACTGCTCGGGCATTGGAGTACCTGCATGAAGTTTGTTCGCCATCTA TTATTCATAAGAATATCAAGTCAGCGAATATATTATTGGACACAGAGCTCAATCCACATCTCTCAGATGCTGGCCTGGCAAGCAGTCTCCATAATGCAGA CCAGGTTTTGAACTATAATGCAGGTTCTGGATACAGTGCACCTGAGGTAGCTATGTCCGGTCATTATACTCTAAAGAGTGATGTTTACAGTTTTGGTGCG GTCATGTTGGAGCTTCTAACTGGACGTAAACCATTTGACAGCTCAAGGCCTAGATCTGAGCAATCTTTGGTTCGCTGGGCAACTCCTCAGCTCCATGACA TTGATTCCTTATCCAAAATGGTTGATCCAGAACTCAAAGGGCTCTACCCTGTCAAATCTCTTTCCCGGTTTGCTGATGTTATTGCTCTGTGTGTCCAGCC TGAGCCAGAGTTTCGACCTCCTATGTCAGAAGTGGTTCAAGCATTGGTTCGTTTAGTGCAGAGAGCTAACATGAGCAAGAGAACTATCGGAAACGAACAA GGAGAAACACCAAGAGCTGACAACCCAGATACACAAGACTATATGTCTTGA
AA sequence Show only first row Show all	>Potri.003G073700.1 pacid=42786473 polypeptide=Potri.003G073700.1.p locus=Potri.003G073700 ID=Potri.003G073700.1.v4.1 annot-version=v4.1 MMENWRGVVLLVSLLIVCIFGCVNGATDPNDASALRVMYISLQSPGQLTQWSANGDDPCGQNWKGIICSGSRVTEIKLPSLGLPGSLGYQLTSLTAVTNL DMSYNNLAGNIPDQLPPNLQQLNLANNQFSGGIPYSISQLPSLKYLNLGHNQLQNQLGDVFGQLPSLSTLDLSFNSLTGDLPQSFSSLSSMTSMYLQNNQ FTGSINVLASLPLENLNVGNNRFTGWIPSQLNSINLQKDGNNWNSGPAPPPPPGTPPTPKGPSHKSGGNASPSGSGAGGGSKKSGLGGGGIAGIIISIFV VGGIVAFFLVKRRSRRSSLDLEMLDNQPFAPLSSTNDIQEMKSMQNSSMVNTKTFDTPASTNLRPPPIDRHKSFDEEEFSPKPVVVKKPVAAPVNVTSYS VADLQMATGSFSVDHLLGEGSFGRVYRAEFDDGKVAVKKLDSGILPSHMSDDFMEMVSSISLLHHPNVTELVGYCSEHGQHLLVYEFHKNGSLHDFLHLS DEYSKPLIWNSRVKIALGTARALEYLHEVCSPSIIHKNIKSANILLDTELNPHLSDAGLASSLHNADQVLNYNAGSGYSAPEVAMSGHYTLKSDVYSFGA VMLELLTGRKPFDSSRPRSEQSLVRWATPQLHDIDSLSKMVDPELKGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVRLVQRANMSKRTIGNEQ GETPRADNPDTQDYMS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53730		SRF6	STRUBBELIG-receptor family 6 (...		Potri.003G073700 [exp]	0	1
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.016G066500 [exp]	1.00	0.7716
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Potri.009G060800 [exp]	2.44	0.7135	CESA4.5
AT1G51940			protein kinase family protein ...		Potri.001G190200 [exp]	2.64	0.6828
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Potri.002G004000 [exp]	4.47	0.6594	Pt-HMG1.3
AT3G07650	CO	COL9	CONSTANS-like 9 (.1.2.3.4)		Potri.002G214500 [exp]	7.07	0.7006
AT4G16563			Eukaryotic aspartyl protease f...		Potri.003G076300 [exp]	7.74	0.6405
AT1G10020			Protein of unknown function (D...		Potri.005G150100 [exp]	10.19	0.7094
					Potri.019G023500 [exp]	17.66	0.6980
AT3G25500		AHF1, AFH1, ATF...	ARABIDOPSIS THALIANA FORMIN HO...		Potri.014G174700 [exp]	19.41	0.6532
AT3G55030		PGPS2	phosphatidylglycerolphosphate ...		Potri.010G214900 [exp]	20.49	0.6399

Compare expression of checked genes

Potri.003G073700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.