Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14360 619 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT5G42930 362 / 4e-120 alpha/beta-Hydrolases superfamily protein (.1) AT1G56630 348 / 3e-114 alpha/beta-Hydrolases superfamily protein (.1) AT5G67050 341 / 1e-111 alpha/beta-Hydrolases superfamily protein (.1) AT1G45201 313 / 7e-101 AtTLL1 ARABIDOPSIS THALIANA TRIACYLGLYCEROL LIPASE-LIKE 1, triacylglycerol lipase-like 1 (.1.2) AT5G18640 62 / 3e-10 alpha/beta-Hydrolases superfamily protein (.1) AT5G18630 57 / 1e-08 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT2G30550 50 / 3e-06 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G31100 49 / 5e-06 alpha/beta-Hydrolases superfamily protein (.1) AT1G30370 47 / 2e-05 DLAH DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G161500 [exp] 978 / 0 AT3G14360 633 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G138800 [exp] 386 / 3e-129 AT5G42930 433 / 7e-149 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G044500 [exp] 375 / 5e-125 AT5G67050 502 / 7e-176 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G027400 [exp] 372 / 6e-124 AT5G42930 529 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G027800 [exp] 370 / 4e-123 AT5G42930 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G027500 [exp] 369 / 9e-123 AT5G42930 529 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G019500 [exp] 59 / 4e-09 AT5G18640 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G263200 [exp] 53 / 5e-07 AT1G30370 607 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Potri.002G044700 [exp] 52 / 7e-07 AT1G06800 662 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037465 [exp] 604 / 0 AT3G14360 584 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10003925 [exp] 589 / 0 AT3G14360 574 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10005092 [exp] 339 / 5e-111 AT5G42930 490 / 2e-171 alpha/beta-Hydrolases superfamily protein (.1) Lus10005709 [exp] 332 / 6e-108 AT5G42930 517 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10042648 [exp] 320 / 4e-103 AT5G42930 514 / 2e-180 alpha/beta-Hydrolases superfamily protein (.1) Lus10009361 [exp] 317 / 8e-102 AT5G42930 478 / 4e-166 alpha/beta-Hydrolases superfamily protein (.1) Lus10033968 [exp] 60 / 2e-09 AT5G18640 463 / 5e-164 alpha/beta-Hydrolases superfamily protein (.1) Lus10015521 [exp] 54 / 1e-07 AT1G30370 524 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10038524 [exp] 54 / 2e-07 AT1G30370 526 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10038526 [exp] 50 / 3e-06 AT1G30370 539 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF01764 [poplar] [flax] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Potri.003G073800.1 pacid=42786690 polypeptide=Potri.003G073800.1.p locus=Potri.003G073800 ID=Potri.003G073800.1.v4.1 annot-version=v4.1 ATGGCGGCTGCGACTAATACTCCTACAGAATTTGAAGAAAACAGCAATGATGATGATAAGAGTGAAATGAACATTACTAACTATCTGATAGTGAGGCCAG AAAAGGGAGGAATATTGGATTTGTTAAGGTACCTGGTGTGGGCTGACATAGGGAGTGGTGTGAAATTCTTGGAGAGCTCGGACGAGGGCATTATGGGTGG GGAGGCCGTTGATCATAGGTGGATAATATTGGTGTCTATTATTGTTAGGAAGATCATTTCTTTACTTGGCAAGCCCATGGAGTACACTGGCTTCGTCGCT GATTTCTTTCTCAATCTCCTGTTTCAGAATGGTGGCATCATGGGCTTATTTCTCAACTTTCTCCAAGGAAAGGTTGTGACACCACAGAGAGACACAGAGA CTTTTATAAGTACAATTGGGCATTTGGATGGGCGGATAGACCTATACAGAGATGAAAACTTGCTTGAACAACTAGATAATTCTGTTTCTGCTGAGAAAAT AGCCACAGAAGAAATAGGGAACCGCGCTCTTATGGACCTCTGTATCATGGCATCCAAATTAGCTTATGAGAATGCCAAAGTTGTTCAAAGTATTGTTGTT CAACACTGGAAGATGCATTTTGTGGACTTCTACAACTGCTGGAACGATTTTCAAAAGGAAATGTCCACTCAGGTGTTCATACTTTGTGACAAGCCCAAGG ATGCAAACTTAATATTGATCAGCTTTCGGGGCACGGAACCTTTTGACGCTGATGATTGGGGTACTGATTTCGATTACTCTTGGTATGAGATTCCGAAACT GGGAAGAGTCCATATGGGATTCTTAGAAGCATTAGGTTTGGGCAATAGAGCAGATACGGCCACCTTCCATAATCACCTTCAGATGAAGAGCACAAGTTTC AACCATGGTTATGATGGATCTGGATCACTATCATCAAATACTGATTCTGACATGGAAGAAAATGAATGGGACCAATTTTCTGCCTCTGAGGAGGGCACTG CTGTAGGTCATAAGAAGTTCCTGTCAGAAAAGGTGAAGAAGACTGCGTACTATGCTGTGAGAAAGAAGCTCAAGAGCATACTCATGGAGCACAAGAATGC GAAATTTGTAGTCACTGGGCATAGCTTAGGTGGGGCACTTGCTGTTTTGTTCCCAACTGTGTTGGTGCTGCACCAACAGACGGATATAATGAAAAGGTTG CTTGGGGTTTACACATTTGGGCAGCCAAGGATTGGGAACTTGCAGCTAGCAAAGTTCATGGAAGCCCATTTGGAGTATCCTGTTCCTAAATACTTCAGGG TGGTGTACAGCTATGACCTTGTCCCTAGATTGCCTTGCGATGACAAAACATTCCTGTATAAGCATTTCGGAGTGTGCCTTTACTACAACAGCCTTTATAT TGAACAAAAATTGGATGAGGAGCCAGACCCCAACTTCTATGGGTTGAGAAATGTTGTTTCGGCACATCTGAATTCTGTATGGGAGTTAATAAGAAGTTTC GTAGTCGGCTACACGCATGGGCCAATGTACAAAGAAAGTTGGTTCATGGTATTTGCCAGGATAATGGGACTGGCACTCCCTGGTATTGCTGCGCATTGCC CCACAGATTATGTTAATTCGGTAAGACTGGGTAAGGAGCGAGTTGTTCGAATGTCTTCTTTCTGA
AA sequence Show only first row Show all	>Potri.003G073800.1 pacid=42786690 polypeptide=Potri.003G073800.1.p locus=Potri.003G073800 ID=Potri.003G073800.1.v4.1 annot-version=v4.1 MAAATNTPTEFEENSNDDDKSEMNITNYLIVRPEKGGILDLLRYLVWADIGSGVKFLESSDEGIMGGEAVDHRWIILVSIIVRKIISLLGKPMEYTGFVA DFFLNLLFQNGGIMGLFLNFLQGKVVTPQRDTETFISTIGHLDGRIDLYRDENLLEQLDNSVSAEKIATEEIGNRALMDLCIMASKLAYENAKVVQSIVV QHWKMHFVDFYNCWNDFQKEMSTQVFILCDKPKDANLILISFRGTEPFDADDWGTDFDYSWYEIPKLGRVHMGFLEALGLGNRADTATFHNHLQMKSTSF NHGYDGSGSLSSNTDSDMEENEWDQFSASEEGTAVGHKKFLSEKVKKTAYYAVRKKLKSILMEHKNAKFVVTGHSLGGALAVLFPTVLVLHQQTDIMKRL LGVYTFGQPRIGNLQLAKFMEAHLEYPVPKYFRVVYSYDLVPRLPCDDKTFLYKHFGVCLYYNSLYIEQKLDEEPDPNFYGLRNVVSAHLNSVWELIRSF VVGYTHGPMYKESWFMVFARIMGLALPGIAAHCPTDYVNSVRLGKERVVRMSSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14360			alpha/beta-Hydrolases superfam...		Potri.003G073800 [exp]	0	1
AT3G25597			unknown protein		Potri.008G111500 [exp]	5.00	0.7917
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Potri.018G141500 [exp]	7.87	0.7765
AT1G34575			FAD-binding Berberine family p...		Potri.011G158400 [exp]	8.24	0.7698
AT5G04200		AtMCP2f, ATMC9	metacaspase 2f, metacaspase 9 ...		Potri.016G024500 [exp]	8.30	0.7745
					Potri.012G027850 [exp]	10.24	0.7531
AT5G24500			unknown protein		Potri.015G005100 [exp]	12.64	0.7366
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Potri.005G208500 [exp]	14.31	0.7646
					Potri.012G028801 [exp]	15.49	0.7408
AT4G35350		XCP1	xylem cysteine peptidase 1 (.1...		Potri.004G207600 [exp]	19.36	0.7042	Pt-XCP1.1
AT3G28050			nodulin MtN21 /EamA-like trans...		Potri.008G145800 [exp]	32.12	0.7058

Compare expression of checked genes

Potri.003G073800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.