Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72300 1214 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G53890 827 / 0 AtPSKR2 phytosylfokine-alpha receptor 2 (.1) AT2G02220 813 / 0 ATPSKR1 phytosulfokin receptor 1 (.1) AT1G17250 668 / 0 AtRLP3 receptor like protein 3 (.1) AT1G17240 650 / 0 AtRLP2 receptor like protein 2 (.1) AT3G13380 517 / 1e-164 BRL3 BRI1-like 3 (.1) AT1G55610 513 / 4e-163 BRL1 BRI1 like (.1.2) AT5G07280 512 / 2e-162 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G39400 488 / 1e-153 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) AT1G17230 477 / 3e-150 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G161000 [exp] 1895 / 0 AT1G72300 1199 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G398500 [exp] 886 / 0 AT5G53890 1268 / 0.0 phytosylfokine-alpha receptor 2 (.1) Potri.011G116900 [exp] 864 / 0 AT5G53890 1279 / 0.0 phytosylfokine-alpha receptor 2 (.1) Potri.008G144700 [exp] 818 / 0 AT2G02220 1258 / 0.0 phytosulfokin receptor 1 (.1) Potri.010G097700 [exp] 811 / 0 AT2G02220 1187 / 0.0 phytosulfokin receptor 1 (.1) Potri.015G141200 [exp] 533 / 1e-169 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.012G139000 [exp] 529 / 5e-168 AT5G07280 1377 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.008G140500 [exp] 512 / 4e-163 AT2G01950 1535 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.011G169600 [exp] 513 / 2e-162 AT1G55610 1500 / 0.0 BRI1 like (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016395 [exp] 1345 / 0 AT1G72300 1170 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10019722 [exp] 1337 / 0 AT1G72300 1189 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10009213 [exp] 840 / 0 AT5G53890 1258 / 0.0 phytosylfokine-alpha receptor 2 (.1) Lus10005403 [exp] 822 / 0 AT5G53890 1248 / 0.0 phytosylfokine-alpha receptor 2 (.1) Lus10033533 [exp] 499 / 1e-157 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10020835 [exp] 493 / 4e-155 AT4G39400 1486 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10038726 [exp] 481 / 4e-151 AT2G01950 1501 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10038875 [exp] 481 / 6e-150 AT5G07280 1248 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10014996 [exp] 480 / 9e-150 AT5G07280 1264 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10006817 [exp] 475 / 2e-148 AT4G39400 1356 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.003G074000.1 pacid=42784986 polypeptide=Potri.003G074000.1.p locus=Potri.003G074000 ID=Potri.003G074000.1.v4.1 annot-version=v4.1 ATGATGGTGAAGATAATGGTCAAGAAAGACAGCTTTTCTACTCTGTCTGGCTTGACATATCAAATCATTATTATTCAAAGACCAACGCCCCCTTCCTCCT CTTCCTTGGTCATGGTCTTATTTCTTCTTTTAATAGCATCGCTACTGTCTCCTTGCCATGCTGCTACTGTCTGCAATCAAGATGATCACGACTCTCTCTT GTCCTTCTCCTCCTATTTATCATCTCCTTTGAATTGGGATCGCTCCACTGATTGCTGCCTCTGGGAAGGAGTTGATTGCAATGAAACTGCAGATGGCCGA GTAACCAGTCTCTCTCTACCTTTTAGAGACCTTACTGGCACCCTATCCCCATATCTTGCCAATCTCACAAGCCTTACTCACCTCAATCTATCACATAATC GCCTGCATGGTCCTCTACCAGTTGGATTCTTTTCCTCTCTCAGCGGCCTCCAGGTCCTTGATCTCAGCTACAACCGTCTCGATGGTGAATTACCATCCGT TGATACCAATAACCTTCCTATCAAGATAGTAGACTTGTCTAGCAACCACTTCGATGGGGAATTAAGTCACTCCAACTCATTTCTCCGGGCAGCCTGGAAT TTGACAAGACTTAATGTCAGCAATAACAGCTTCACAGGCCAAATTCCTTCCAACGTCTGCCAAATTTCTCCTGTTTCCATAACCCTCCTTGACTTCTCCA GCAATGATTTCAGCGGGAACCTTACTCCAGAACTAGGGGAATGTTCCAAACTTGAGATATTCCGCGCTGGTTTCAATAATCTCTCGGGGATGATTCCCGA TGATCTGTACAAAGCAACATCACTTGTACATTTCTCGTTACCTGTTAACTACCTCTCTGGTCCAGTCAGTGATGCCGTGGTCAATCTCACTAATCTTAAG GTTCTCGAGCTGTACTCCAATAAATTTTCCGGCAGGATACCAAGGGACATAGGCAAGCTCTCCAAGTTGGAACAGTTGCTGCTTCACATTAACAGTCTCG CAGGTCCTCTGCCTCCATCTCTGATGAACTGCACCCATCTAGTAAAATTGAATCTGCGAGTCAATTTCTTGGCAGGAAATCTCTCTGACCTCGATTTCTC CACACTCCCCAAGCTTACCACCCTCGATCTTGGTAACAACAACTTTGCAGGTATCTTTCCCACAAGCCTCTACTCATGCACATCACTAGTTGCAGTTAGA CTTGCCAGTAATCAGATAGAGGGGCAGATCTCACCTGACATAACAGCTCTAAAATCTCTGTCTTTTCTCTCAATTTCCGCCAACAACTTAACTAACATTA CTGGGGCTATCCGAATTCTGATGGGTTGCAAGAGCCTCACTGCTCTCATCCTCTCCAATAATACTATGAGTGAAGGTATACTAGACGATGGAAATACATT AGATTCAACTGGATTCCAAAATCTCCAGGTTTTGGCCTTAGGTCGTTGCAAACTCTCTGGTCAAGTGCCTTCCTGGCTAGCCAGCATCACGAGCCTACAG GTCATAGATCTGTCTTACAATCAAATCAGGGGTTCAATTCCTCGTTGGCTGGGTGATCTGTCAAGCCTTTTCTACTTGGACTTGTCCAATAACCTTCTTT CAGGAGGATTTCCTCTGGAACTCGCAGGATTGCGAGCACTAACATCGCAAGAGGCTGTTAAACGAGTGGAAAGAAGTTATCTAGAGTTGCCCGTGTTTGT CAAGCCCACAAATGCTACCAATTTGCAGTACAATCAGCTCTCTAGCCTGCCACCAGCTATATACCTTAAAAACAACAACCTCAGTGGCAACATCCCTGTA CAGATTGGCCAACTGAAGTTCCTTCATGTGCTGGATCTCAGTGATAACAGATTCTTCGGGAACATTCCTGATCAGTTATCGAACCTCACTAACTTGGAGA AATTGGATCTCTCAGGAAATGACTTATCCGGAGAAATCCCCACTTCACTCTCAGGTCTGCATTTCCTGTCTTTGTTCAATGTTGCCAATAATGAACTTCA AGGACCTATACCATCGGGAGGTCAGTTTGATACTTTCCCCAGTTCCAGCTTTGTAGGGAATCCAGGGTTGTGTGGTCAGGTTTTGCAGCGATCTTGCTCC AGTTCACCAGGAACCAACCATTCTTCGGCTCCTCATAAAAGCGCAAACATAAAACTCGTCATTGGACTTGTTGTTGGTATTTGTTTTGGCACCGGTTTAT TTATTGCTGTGCTAGCACTGTGGATATTGTCCAAGAGAAGGATCATTCCTGGAGGGGACACCGACAACACTGAGTTGGATACAATTTCCATCAACTCTGG ATTTCCTCTCGAGGGTGACAAGGATGCCAGTTTAGTTGTATTGTTCCCAAGTAATACTTATGAGATCAAGGATCTAACCATATCTGAACTCTTGAAATCC ACTGACAATTTTAATCAAGCAAATATTGTCGGTTGTGGGGGTTTTGGTCTGGTGTATAAAGCAACATTAGGAGATGGGAGCAAACTGGCTGTCAAGAAAC TCTCCGGAGACTTGGGTCTGATGGAAAGAGAATTCAGAGCAGAGGTGGAGGCTCTTTCCACAGCTCAACATGAAAACCTGGTTTCCCTGCAAGGCTATTG TGTGCACGAGGGATGTCGCCTGCTTATATATTCCTTCATGGAAAATGGGAGTTTGGATTACTGGTTGCATGAGAAGACTGATGGTGCATCCAACCTGGAT TGGCCCACGAGGCTCAAGATTGCACGGGGCGCAGGTTCTGGTCTGGCTTACATGCACCAGATATGTGAGCCTCATATTGTGCATCGTGACATCAAATCTA GCAACATCCTCCTTGATGAGAAGTTCGAAGCACATGTAGCAGATTTTGGATTGTCCCGGTTGATTCTTCCTTACCAGACTCATGTTACAACCGAACTTGT TGGAACTCTGGGTTATATTCCTCCGGAGTATGGGCAAGCATGGGTAGCTACTTTGAGAGGAGATATATACAGTTTTGGAGTTGTTATGCTTGAACTGCTG ACTGGGAAGAGGCCTGTGGAGGTATCCAAGCCAAAGATGTCAAGAGAATTGGTTGGCTGGGTGCAGCAAATGAGAAATGAGGGTAAACAAAATGAAGTCT TTGATCCTCTCCTGAGAGGAAAGGGTTTTGATGACGAGATGCTGCAAGTACTAGATGTGGCCTGCATGTGTGTTAGCCAGAATCCTTTCAAGAGACCAAC CATCAAGGAAGTTGTTGATTGGCTCAAGAATGTTGGCTCGCACAGAGATGAAAACAAGGGTTAG
AA sequence Show only first row Show all	>Potri.003G074000.1 pacid=42784986 polypeptide=Potri.003G074000.1.p locus=Potri.003G074000 ID=Potri.003G074000.1.v4.1 annot-version=v4.1 MMVKIMVKKDSFSTLSGLTYQIIIIQRPTPPSSSSLVMVLFLLLIASLLSPCHAATVCNQDDHDSLLSFSSYLSSPLNWDRSTDCCLWEGVDCNETADGR VTSLSLPFRDLTGTLSPYLANLTSLTHLNLSHNRLHGPLPVGFFSSLSGLQVLDLSYNRLDGELPSVDTNNLPIKIVDLSSNHFDGELSHSNSFLRAAWN LTRLNVSNNSFTGQIPSNVCQISPVSITLLDFSSNDFSGNLTPELGECSKLEIFRAGFNNLSGMIPDDLYKATSLVHFSLPVNYLSGPVSDAVVNLTNLK VLELYSNKFSGRIPRDIGKLSKLEQLLLHINSLAGPLPPSLMNCTHLVKLNLRVNFLAGNLSDLDFSTLPKLTTLDLGNNNFAGIFPTSLYSCTSLVAVR LASNQIEGQISPDITALKSLSFLSISANNLTNITGAIRILMGCKSLTALILSNNTMSEGILDDGNTLDSTGFQNLQVLALGRCKLSGQVPSWLASITSLQ VIDLSYNQIRGSIPRWLGDLSSLFYLDLSNNLLSGGFPLELAGLRALTSQEAVKRVERSYLELPVFVKPTNATNLQYNQLSSLPPAIYLKNNNLSGNIPV QIGQLKFLHVLDLSDNRFFGNIPDQLSNLTNLEKLDLSGNDLSGEIPTSLSGLHFLSLFNVANNELQGPIPSGGQFDTFPSSSFVGNPGLCGQVLQRSCS SSPGTNHSSAPHKSANIKLVIGLVVGICFGTGLFIAVLALWILSKRRIIPGGDTDNTELDTISINSGFPLEGDKDASLVVLFPSNTYEIKDLTISELLKS TDNFNQANIVGCGGFGLVYKATLGDGSKLAVKKLSGDLGLMEREFRAEVEALSTAQHENLVSLQGYCVHEGCRLLIYSFMENGSLDYWLHEKTDGASNLD WPTRLKIARGAGSGLAYMHQICEPHIVHRDIKSSNILLDEKFEAHVADFGLSRLILPYQTHVTTELVGTLGYIPPEYGQAWVATLRGDIYSFGVVMLELL TGKRPVEVSKPKMSRELVGWVQQMRNEGKQNEVFDPLLRGKGFDDEMLQVLDVACMCVSQNPFKRPTIKEVVDWLKNVGSHRDENKG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72300			Leucine-rich receptor-like pro...		Potri.003G074000 [exp]	0	1
AT2G45040			Matrixin family protein (.1)		Potri.003G077400 [exp]	7.48	0.8234
					Potri.004G212900 [exp]	9.16	0.8449
AT3G14470			NB-ARC domain-containing disea...		Potri.001G261600 [exp]	11.83	0.8467	RGA.64
AT4G21670		FRY2, FLP1, ATC...	FIERY 2, C-terminal domain pho...		Potri.011G049400 [exp]	12.48	0.8588
AT3G47790		ABCA8, ATATH7	ATP-binding cassette A8, ABC2 ...		Potri.013G123401 [exp]	17.94	0.8394
AT2G40770			zinc ion binding;DNA binding;h...		Potri.019G060900 [exp]	18.97	0.8495
AT4G33210		SLOMO	SLOW MOTION, F-box family prot...		Potri.006G220900 [exp]	19.33	0.8123
AT1G11060			WAPL (Wings apart-like protein...		Potri.004G039900 [exp]	20.92	0.7286
AT5G04290		SPT5L, KTF1	SPT5-LIKE, kow domain-containi...		Potri.010G228766 [exp]	21.35	0.8394
AT5G02880		UPL4	ubiquitin-protein ligase 4 (.1...		Potri.016G085200 [exp]	21.54	0.8191

Compare expression of checked genes

Potri.003G074000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.