Plant FIBer expression Database

Potri.003G074200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G30970 392 / 8e-135 C2H2ZnF SUF4 suppressor of FRIGIDA4, zinc finger (C2H2 type) family protein (.1), zinc finger (C2H2 type) family protein (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G160700
[exp]
680 / 0 AT1G30970 348 / 2e-117 suppressor of FRIGIDA4, zinc finger (C2H2 type) family protein (.1), zinc finger (C2H2 type) family protein (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038373
[exp]
432 / 2e-150 AT1G30970 430 / 1e-150 suppressor of FRIGIDA4, zinc finger (C2H2 type) family protein (.1), zinc finger (C2H2 type) family protein (.2)
Lus10036234
[exp]
431 / 8e-150 AT1G30970 430 / 1e-150 suppressor of FRIGIDA4, zinc finger (C2H2 type) family protein (.1), zinc finger (C2H2 type) family protein (.2)
PFAM info
Representative CDS sequence
>Potri.003G074200.7 pacid=42787249 polypeptide=Potri.003G074200.7.p locus=Potri.003G074200 ID=Potri.003G074200.7.v4.1 annot-version=v4.1
ATGGGAAAGAAGAAGAAGAGAGCAGCGTCAAAAGTATGGTGCTATTACTGCGATAGGGAATTCGATGACGAGAAGATTTTAGTACAGCACCAGAAAGCCA
AGCATTTCAAGTGCCATGTCTGCCATAAAAAGCTATCGACCGCTGGTGGCATGGCCATTCACGTTCTCCAGGTCCACAAAGAATCCGTCACCAAGGTTCC
CAATGCAAAACCTGGAAGAGAATCAACTGATATTGAAATATATGGAATGCAAGGAATCCCACCTGATGTTCTGGCTGCTCACTATGGAGAAGAAGAAGAT
GAGAATCCATCAAAAGCTGCTAAAGTGGATATTCCATCAGCTCAGCTTGTTGGTGGTATGGTGCCAGGACCATTGGGTGCTGGATATCCTCCACGACCTC
TTGCTGCAATGCAGCCAATTTATAATTCTGCTGTACCTGCTCCTCATGCTGGTTGGCCGGTTCCTCGTTCACAACATTGGTTGCCACAGCATCCTGCAGT
TTCAATCCCTCCTCCTGCCCCAATCACATATACCCAGCAGCCACTATTTCCTGTACAAAATGTGAGGCCTCCTGTGCCATCAACCATGACACCTGCACTC
ATACCTTCACAAGTAACTCCTCCAGGACTGCCCTCATCCACACCATCTGTATCACAACCATTGTTCCCTGTTAACAATAATTTGCCTCAAAGTTCAACAT
TTTCTGCTCCTTTTCCTTCGACAAGTCTCTTACCAAGCTCGCCTGCAGAAGTTAGAGGTTCAATGAATGTGCATTTGGGAGTCAATACTTCAATGACAAC
TGGCTACCTTACTCAGAGTGCTTCAGCATCTGGGACACTAGGCAATACACATTCTTATGCCTCTGGTCCAAATACTGGTGGCCCTTCTATTGGACCGCCC
CCTGTAATTGCAAACAAGGCACCTGTCATCCAGCCAGCTGTTAATGAAGTCTATCTTGTTTGGGATGATGAGGCAATGTCCATGGAGGAAAGAAGAATGT
CCTTACCAAAGTATCAGGTGCATGATGAAACTAGCCAGGTAAGTTGTGACTACCCCTTTACTATTTGGAGTTGGTTTGCACGTCTAACCAGATGGGTAGG
CTTTATGCTTTTTGTTTTCAGATACAGTTGTTTACGCATTGTTACCTATTTAGAGAGGTATTTCTGTATGAATTTCCAATTTTTCTTTTTCTTAGCTTGT
CAACAAACCCACAGTTTGCAAATGGTTATGTGCCTTGTAGTCAAGTATCTTTTGACTTCTAATGTCCATTGGCTGATGGGCATGCTGTTTCTGTTTTTGT
TTTCCGCAATTATGTGGTTTGCATGCCAATGCCGGCGCTTTGTGGTTGTCAGATGA
AA sequence
>Potri.003G074200.7 pacid=42787249 polypeptide=Potri.003G074200.7.p locus=Potri.003G074200 ID=Potri.003G074200.7.v4.1 annot-version=v4.1
MGKKKKRAASKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKESVTKVPNAKPGRESTDIEIYGMQGIPPDVLAAHYGEEED
ENPSKAAKVDIPSAQLVGGMVPGPLGAGYPPRPLAAMQPIYNSAVPAPHAGWPVPRSQHWLPQHPAVSIPPPAPITYTQQPLFPVQNVRPPVPSTMTPAL
IPSQVTPPGLPSSTPSVSQPLFPVNNNLPQSSTFSAPFPSTSLLPSSPAEVRGSMNVHLGVNTSMTTGYLTQSASASGTLGNTHSYASGPNTGGPSIGPP
PVIANKAPVIQPAVNEVYLVWDDEAMSMEERRMSLPKYQVHDETSQVSCDYPFTIWSWFARLTRWVGFMLFVFRYSCLRIVTYLERYFCMNFQFFFFLAC
QQTHSLQMVMCLVVKYLLTSNVHWLMGMLFLFLFSAIMWFACQCRRFVVVR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G30970 C2H2ZnF SUF4 suppressor of FRIGIDA4, zinc f... Potri.003G074200
[exp]
0 1
AT5G55100 SWAP (Suppressor-of-White-APri... Potri.001G356800
[exp]
1.73 0.8804
AT1G20760 Calcium-binding EF hand family... Potri.007G063200
[exp]
2.00 0.8656
AT1G30970 C2H2ZnF SUF4 suppressor of FRIGIDA4, zinc f... Potri.001G160700
[exp]
2.23 0.8438
AT3G23900 RNA recognition motif (RRM)-co... Potri.001G319000
[exp]
4.24 0.8569
AT1G04080 PRP39 Tetratricopeptide repeat (TPR)... Potri.014G192800
[exp]
6.32 0.8279
AT2G47020 Peptide chain release factor 1... Potri.014G114000
[exp]
8.36 0.8019
AT5G04480 UDP-Glycosyltransferase superf... Potri.010G232000
[exp]
8.94 0.8161
AT5G10790 UBP22 ubiquitin-specific protease 22... Potri.006G266100
[exp]
9.21 0.7962
AT3G49725 GTP-binding protein, HflX (.1) Potri.007G007700
[exp]
9.53 0.8287
AT5G49530 SIN-like family protein (.1) Potri.007G028600
[exp]
9.79 0.7834

Potri.003G074200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.