Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SETH1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34980 383 / 2e-134 SETH1 phosphatidylinositolglycan synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G160600 [exp] 518 / 0 AT2G34980 357 / 5e-124 phosphatidylinositolglycan synthase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009915 [exp] 426 / 2e-151 AT2G34980 383 / 2e-134 phosphatidylinositolglycan synthase family protein (.1) Lus10024198 [exp] 423 / 4e-150 AT2G34980 380 / 2e-133 phosphatidylinositolglycan synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06432 [poplar] [flax] GPI2 Phosphatidylinositol N-acetylglucosaminyltransferase
Representative CDS sequence Show only first row Show all	>Potri.003G074300.1 pacid=42786723 polypeptide=Potri.003G074300.1.p locus=Potri.003G074300 ID=Potri.003G074300.1.v4.1 annot-version=v4.1 ATGGATAACATCATCAGTGAGAGCCTGCTTCGTCCCAATTGGAGAAAAGTCGCATATGGAGGAATGCAGCCTGGGTTTGATGATAATCATACTGACGAGT CTTTTCTTGAAGATATGGTCATGAATGCTAATGTTGTTAAGCGGGACATTCTGAAGGTGATGCAAGACTCAGTTTCTATCTCTCAGTATCTGTGCATTGT TACTCTTGTCAGCTTGGTTTGGGCTCACACCCTTCAATCAACCCTTGATGAAAATTCCCTCTTGCTCCTTGATGCAAGCCTTTTTGGATCAGGTTTTTTA GTTCTTCTTTTAACCAAAGAAATGCGTTCCTTGAATCTACTCTTCCATTATATCCTCAATATCTCTTTTTTCACAACTGGGTTATACATGTTGGCTCCTA TTTATCACCCTCTCACAAGGTCCATAAGCTCGGACTCCATCTGGGCAGTTACTGTTACACTTGTCATACTTCATCTCTTCCTGCATGATTATTCAGGATC GACCATTAAAGCTCCTGTGGCCCTAAAAAATCCAAGCTTAACCAGTTGTGTATCTTTAAATGCTTCTGTTGTCGCTTCAGTTTTTATTGCGTCTCGCCTT CCATCAAGGCTGCATGTATTTGCCATCATGCTATTTTCCTTGCAAGTCTTCCTTTTTGCTCCATTTGTCACTTACTGTATCAAGAAATTCTCCTTCCGCT TGCACCTTGTGTTTTCTTTTGGGTTGATGGCCGTGACCCTGGCTCTGGTTTATACACTGCACCACTTACTTTTCATGCTACTGCTTGGTTTCTTGGTGTT TATAAGTGTTGTCTGTCCTTATTGGCTCATAAGAATTCAGGAATACAAGTTTGAGATCAATGGCCCTTGGGATGAGGCTAAGCTTTGTTTCAATGTAACA GATTGA
AA sequence Show only first row Show all	>Potri.003G074300.1 pacid=42786723 polypeptide=Potri.003G074300.1.p locus=Potri.003G074300 ID=Potri.003G074300.1.v4.1 annot-version=v4.1 MDNIISESLLRPNWRKVAYGGMQPGFDDNHTDESFLEDMVMNANVVKRDILKVMQDSVSISQYLCIVTLVSLVWAHTLQSTLDENSLLLLDASLFGSGFL VLLLTKEMRSLNLLFHYILNISFFTTGLYMLAPIYHPLTRSISSDSIWAVTVTLVILHLFLHDYSGSTIKAPVALKNPSLTSCVSLNASVVASVFIASRL PSRLHVFAIMLFSLQVFLFAPFVTYCIKKFSFRLHLVFSFGLMAVTLALVYTLHHLLFMLLLGFLVFISVVCPYWLIRIQEYKFEINGPWDEAKLCFNVT D

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34980		SETH1	phosphatidylinositolglycan syn...		Potri.003G074300 [exp]	0	1	Pt-SETH1.1
					Potri.018G092600 [exp]	4.69	0.7377
AT1G17370		UBP1B	oligouridylate binding protein...		Potri.006G139300 [exp]	6.24	0.7231
AT1G11925			Stigma-specific Stig1 family p...		Potri.004G031000 [exp]	15.29	0.6993
AT5G47900			Protein of unknown function (D...		Potri.009G136700 [exp]	17.32	0.7008
AT4G27740			Yippee family putative zinc-bi...		Potri.015G009100 [exp]	19.18	0.7242
					Potri.001G178950 [exp]	21.35	0.6811
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.015G027700 [exp]	22.44	0.6989
AT4G25330			unknown protein		Potri.002G216900 [exp]	28.77	0.7020
AT2G23090			Uncharacterised protein family...		Potri.002G120100 [exp]	28.91	0.6817
AT1G69330			RING/U-box superfamily protein...		Potri.010G161100 [exp]	32.00	0.6498

Compare expression of checked genes

Potri.003G074300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.