Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47640 157 / 5e-48 bHLH PYE, bHLH047, POPEYE, PYE1 POPEYE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT3G19860 64 / 4e-12 bHLH bHLH121 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G36060 56 / 2e-09 bHLH bHLH11, bHLH011 basic Helix-Loop-Helix 11, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT5G54680 40 / 0.0005 bHLH bHLH105, ILR3 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G142700 [exp] 296 / 2e-102 AT3G47640 170 / 1e-52 POPEYE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.009G129600 [exp] 70 / 4e-14 AT3G19860 238 / 2e-76 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.004G168100 [exp] 68 / 3e-13 AT3G19860 250 / 4e-82 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.005G113400 [exp] 64 / 8e-12 AT3G19860 211 / 1e-66 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024233 [exp] 181 / 5e-57 AT3G47640 187 / 4e-59 POPEYE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10008622 [exp] 107 / 1e-29 AT3G47640 100 / 6e-27 POPEYE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10042194 [exp] 79 / 1e-18 AT3G47640 94 / 1e-24 POPEYE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10028456 [exp] 56 / 3e-09 AT3G19860 225 / 2e-72 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10041908 [exp] 55 / 1e-08 AT3G19860 224 / 2e-72 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10022186 [exp] 41 / 0.0003 AT4G14410 218 / 4e-71 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10011167 [exp] 40 / 0.0007 AT5G54680 331 / 4e-116 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10043076 [exp] 40 / 0.001 AT5G54680 330 / 8e-116 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G074400.1 pacid=42785827 polypeptide=Potri.003G074400.1.p locus=Potri.003G074400 ID=Potri.003G074400.1.v4.1 annot-version=v4.1 ATGAGCATGGGTTCAGAGCTGAATGAAACAGTTGAGGATGTGACTGAAAATCGGTGCTTTCCTGCTGGGGAGAATAAGGGGAAAGTTCCGAAAAGAATTC ACAAGTCTGAGAGGGAGAAACTGAAGCGTGAGCAATTGAATGAGCTCTTTCTTGAGTTAGCCTCTGCTCTTGAATTGAGTCAGCCAAATAATGGGAAGGC TTCTATGTTGTGTGAAACAACTCGTTTATTAAAGGATTTGCATACGCAGATTGAATCCCTCAAGAAGGAAAATGTAGCTCTCTTATCTGAATCTCACTAT GTAACTGTTGAGAAAAATGAGCTGAGGGAGGAGAGTTCTGCCTTGGAACATCAAATTGGGAAACTGCACAGTGAACTTGAAATGAGAGCGGCTTCACAAT CAAAGCCTGATCTAAATGTGCCTCCTCCTGAATTTCTGCAACCACCACATTTTCCAGTAGACTCTTTCAGGTTGCCTGCTGTAGATGCTGTTGCATTGCA GCAGACATCGACTGTCTTCGTGGTTCCCATCAGTCCTGATCACGTGCAAGGTTTTCCAATGGCTACCTCGAATGTGAGCAAACCACATCCTAGATATCCA ACCGCAGCTGATTCTTGGCCGTCTCAGCTTCTTAGGGAGCAGCAAATTGGCAGGAAGGAAGTGTAA
AA sequence Show only first row Show all	>Potri.003G074400.1 pacid=42785827 polypeptide=Potri.003G074400.1.p locus=Potri.003G074400 ID=Potri.003G074400.1.v4.1 annot-version=v4.1 MSMGSELNETVEDVTENRCFPAGENKGKVPKRIHKSEREKLKREQLNELFLELASALELSQPNNGKASMLCETTRLLKDLHTQIESLKKENVALLSESHY VTVEKNELREESSALEHQIGKLHSELEMRAASQSKPDLNVPPPEFLQPPHFPVDSFRLPAVDAVALQQTSTVFVVPISPDHVQGFPMATSNVSKPHPRYP TAADSWPSQLLREQQIGRKEV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47640	bHLH	PYE, bHLH047, P...	POPEYE, basic helix-loop-helix...		Potri.003G074400 [exp]	0	1
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Potri.017G087300 [exp]	1.41	0.6879
AT3G58790		GAUT15	galacturonosyltransferase 15 (...		Potri.014G142000 [exp]	4.00	0.6554
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Potri.018G084500 [exp]	7.48	0.7434
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.012G094600 [exp]	7.54	0.6670
AT1G15780			unknown protein		Potri.003G014156 [exp]	20.04	0.6362
AT3G57120			Protein kinase superfamily pro...		Potri.009G009600 [exp]	21.97	0.6302
AT2G01100			unknown protein		Potri.008G126800 [exp]	44.89	0.6205
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Potri.013G096701 [exp]	50.43	0.5992
AT5G49300	GATA	GATA16	GATA transcription factor 16 (...		Potri.002G199800 [exp]	57.48	0.5842
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014326 [exp]	72.93	0.5725

Compare expression of checked genes

Potri.003G074400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.