Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47530 750 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21065 454 / 4e-153 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G06540 440 / 5e-147 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G23330 432 / 5e-143 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 429 / 2e-142 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G56550 426 / 4e-142 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 430 / 8e-142 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37380 425 / 4e-141 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G31920 423 / 1e-140 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G66520 422 / 2e-140 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G001000 [exp] 479 / 4e-162 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.010G168800 [exp] 454 / 8e-153 AT2G02980 860 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G050200 [exp] 453 / 3e-152 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G199800 [exp] 451 / 6e-152 AT1G34160 702 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G191200 [exp] 451 / 2e-151 AT5G48910 852 / 0.0 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G029500 [exp] 444 / 2e-149 AT3G56550 740 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G065500 [exp] 445 / 4e-149 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G040100 [exp] 445 / 1e-147 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G252400 [exp] 436 / 2e-147 AT4G21065 496 / 8e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000274 [exp] 595 / 0 AT3G47530 554 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024971 [exp] 444 / 1e-148 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010385 [exp] 443 / 2e-148 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013319 [exp] 442 / 2e-148 AT4G21065 744 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10005207 [exp] 440 / 7e-147 AT4G21065 741 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10029344 [exp] 435 / 4e-145 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029401 [exp] 424 / 2e-141 AT1G34160 674 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025490 [exp] 424 / 6e-141 AT2G33760 734 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10037387 [exp] 419 / 2e-139 AT3G56550 700 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033026 [exp] 422 / 1e-138 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.003G074500.1 pacid=42785720 polypeptide=Potri.003G074500.1.p locus=Potri.003G074500 ID=Potri.003G074500.1.v4.1 annot-version=v4.1 ATGACACCAGCCTTCCATCTCTTTAACTCAAACCGTTCCTCTCTCAATCTCCAACACTACCTCTGTCTTTCTCATTACACCACCACAACACCTCCATCAA TTGCAAAACAATTCCAAGAACATCATCGTCATCAACAAAACCAAACAAACCCTCTCCTTTCAAGCCTTGAAAGAAAAAGCCACCAACCTTTGATTTCCCT CATAAAATCATGCACCCAAAAGTCCCATTTGCTCCAAATCCATGGCTATCTAATCCGCAACTCGCTCCTTCACTACCCTGCCATTTCTCTCCCTTTCTTG TCTCGCATGGCACTCTCTCCCATCCGAGATATCTCATATTCCCGCCAATTTTTTTCTCAAATTCCGAACCCATCTGTATTTCTATACAACACATTAATAA GAGCTTATTCTATGAGTAACTCTCCTACTGAAGGGTTCTTTATGTACCAAGAAATGAGAAAAAAAGGTTTACGTGCAGATCCTGTATCTTTATCTTTTGT TATCAGGTGTTATATTAGAATTTGTTCGTTAATTGGTGGTGAACAGGTTCATGCAAGGATTTTAAGTGATGGGCATCAATCTGATAGCTTGCTGCTTACT AACTTGATGGATTTGTATTCGCTTTGCGATAAGGGTAGCGAAGCTTGCAAAGTGTTTGATGAAATGCGTCAAAGAGACACTATTGCTTGGAACGTTTTAA TATCTTGTTATATGCGTAATCGTAGGACTAGAGATGTTTTGGTAATATTTGATGGTATGCTGAGTGGTGAGCTCGGATGTGAACCGGATGATGTAACGTG CTTGCTTCTACTCCAAGCATGTGCAAACTTGGGTGCGTTAGAATTTGGTGAGAAGGTTCATGGTCATATTGTGGAACGAGGGTATGATAATGCGACCAAC TTGTGTAATTCGCTTATAGCAATGTATTCGCAGTTTGGGAATTTGGACAAGGCTTTTGGTGTGTTTAAGGGCATGCACAATAAGAATGTGGTTACATGGA GTGCCATCATTTCAGGTCTTGCTATGAATGGATACGGGAGAGAAGCTATTGGAGCATTTGAAGAGATGCTAAAAATGGGTGTTTTGCCTGATGATCTGAC TTTTACTGGAGTTCTGTCCGCTTGTAGTAATTGTGGGTTGGTTGACAAGGGGATGATTATCTTTGCTAGAATGAGCAAGGAATTTGGGATAGTGCCAAAT ATTCATCATTATGGATGTATGGTTGACCTTCTTGGGCGTGCTGGTCAGCTTCATCAAGCATATCAGCTTATAATGTCAATGAGGGTCAAACCAGATTCAA CCATATGGAGGACCTTACTTGGGGCTTGTAGAATTCATCGCAATGTTATACTTGGAGAACATGTTGTTGAACATTTGATTGAACTTAAGGCTCAAGAGGC TGGTGATTATGTTTTATTGTTCAATTTGTATTCTTCCGTTGACAATTGGAAGAAGGTGACAGAATTGAGGAAGTTCATGAAGGAGAAGGGGATCCAAACC ACACCTGCCTCTAGTTCAATTGAATTGAAAGGTAAGGTCCATGAGTTTGTTGTGGATGATGTTTCTCATCCACAAAAGGATGAGATTTATGAGATGTTGG ACGAGATTAGTAAGCAGCTGAAGATTGCTGGTTATGTTGCTGAAATAACATCCGAGTTGCCCAATTTAGATGCAGAAGAAAAAAGGTATGTTCTTTCTTA TCATAGTGAGAAGTTGGCTATAGCTTTTGGAGTTCTTGCAACACCACCAGGCACGACAATCAGAATAGCGAAGAATCTCAGAATTTGTGTTGATTGCCAC AATTTTGCCAAGATCCTTTCAGGGGTTTATAACAGACAAGTAATTATTACAGATCATACTCGGTTCCATCATTTTCGAGGAGGACACTGCTCATGCAATG ATTATTGGTAA
AA sequence Show only first row Show all	>Potri.003G074500.1 pacid=42785720 polypeptide=Potri.003G074500.1.p locus=Potri.003G074500 ID=Potri.003G074500.1.v4.1 annot-version=v4.1 MTPAFHLFNSNRSSLNLQHYLCLSHYTTTTPPSIAKQFQEHHRHQQNQTNPLLSSLERKSHQPLISLIKSCTQKSHLLQIHGYLIRNSLLHYPAISLPFL SRMALSPIRDISYSRQFFSQIPNPSVFLYNTLIRAYSMSNSPTEGFFMYQEMRKKGLRADPVSLSFVIRCYIRICSLIGGEQVHARILSDGHQSDSLLLT NLMDLYSLCDKGSEACKVFDEMRQRDTIAWNVLISCYMRNRRTRDVLVIFDGMLSGELGCEPDDVTCLLLLQACANLGALEFGEKVHGHIVERGYDNATN LCNSLIAMYSQFGNLDKAFGVFKGMHNKNVVTWSAIISGLAMNGYGREAIGAFEEMLKMGVLPDDLTFTGVLSACSNCGLVDKGMIIFARMSKEFGIVPN IHHYGCMVDLLGRAGQLHQAYQLIMSMRVKPDSTIWRTLLGACRIHRNVILGEHVVEHLIELKAQEAGDYVLLFNLYSSVDNWKKVTELRKFMKEKGIQT TPASSSIELKGKVHEFVVDDVSHPQKDEIYEMLDEISKQLKIAGYVAEITSELPNLDAEEKRYVLSYHSEKLAIAFGVLATPPGTTIRIAKNLRICVDCH NFAKILSGVYNRQVIITDHTRFHHFRGGHCSCNDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47530			Pentatricopeptide repeat (PPR)...		Potri.003G074500 [exp]	0	1
AT5G61370			Pentatricopeptide repeat (PPR)...		Potri.012G068400 [exp]	4.79	0.9273
AT1G43760			DNAse I-like superfamily prote...		Potri.002G000350 [exp]	5.83	0.9250
AT1G03540			Pentatricopeptide repeat (PPR-...		Potri.013G145000 [exp]	8.66	0.9169
AT3G02490			Pentatricopeptide repeat (PPR)...		Potri.004G108000 [exp]	11.00	0.8240
AT2G15630			Pentatricopeptide repeat (PPR)...		Potri.009G109001 [exp]	12.16	0.9129
AT1G05670			Pentatricopeptide repeat (PPR-...		Potri.006G223300 [exp]	13.74	0.8996
AT2G03880		REME1	required for efficiency of mit...		Potri.004G208000 [exp]	17.14	0.9055
AT1G73710			Pentatricopeptide repeat (PPR)...		Potri.013G144800 [exp]	17.66	0.8975
AT2G15630			Pentatricopeptide repeat (PPR)...		Potri.004G147700 [exp]	17.66	0.9056
AT3G18020			Pentatricopeptide repeat (PPR)...		Potri.015G039300 [exp]	19.23	0.8996

Compare expression of checked genes

Potri.003G074500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.