Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35020 825 / 0 GlcNAc1pUT2 N-acetylglucosamine-1-phosphate uridylyltransferase 2 (.1) AT1G31070 818 / 0 GlcNAc1pUT1 N-acetylglucosamine-1-phosphate uridylyltransferase 1 (.1.2) AT5G52560 75 / 5e-14 ATUSP UDP-sugar pyrophosphorylase (.1) AT5G46420 52 / 5e-07 16S rRNA processing protein RimM family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G159700 [exp] 888 / 0 AT2G35020 779 / 0.0 N-acetylglucosamine-1-phosphate uridylyltransferase 2 (.1) Potri.002G077400 [exp] 76 / 3e-14 AT5G52560 1040 / 0.0 UDP-sugar pyrophosphorylase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038366 [exp] 828 / 0 AT1G31070 846 / 0.0 N-acetylglucosamine-1-phosphate uridylyltransferase 1 (.1.2) Lus10036227 [exp] 825 / 0 AT1G31070 844 / 0.0 N-acetylglucosamine-1-phosphate uridylyltransferase 1 (.1.2) Lus10028658 [exp] 72 / 3e-13 AT5G52560 1030 / 0.0 UDP-sugar pyrophosphorylase (.1) Lus10000971 [exp] 69 / 3e-12 AT5G52560 1004 / 0.0 UDP-sugar pyrophosphorylase (.1) Lus10011969 [exp] 47 / 4e-05 AT5G46420 579 / 0.0 16S rRNA processing protein RimM family (.1) Lus10004590 [exp] 43 / 0.0005 AT5G46420 587 / 0.0 16S rRNA processing protein RimM family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01704 [poplar] [flax] UDPGP UTP--glucose-1-phosphate uridylyltransferase
Representative CDS sequence Show only first row Show all	>Potri.003G074700.1 pacid=42784489 polypeptide=Potri.003G074700.1.p locus=Potri.003G074700 ID=Potri.003G074700.1.v4.1 annot-version=v4.1 ATGAGGGAACCTATTGAAACCAACAACGGATCACCTCCACCACTACCTCCACAAGCGTTGCTCGAGAGGCTTAAAGATTATGGCCAGGAAGACGCTTTTG CCCTCTGGGACGAGCTCTCTACTGAAGAGCGGGAACTCCTTGTCAAGGACATCGAGAGCTTAGATCTTCCAAGGTTGGATCGGATAATCCGATGTTCGCT TCGATCTCAAGGGCTACCGGCGGCGGCAATTGAGCCGGTTCCGGAGAATACCGTGTCGACGGTAGAAGATAGAACGATAGAAGAAAGAGAGAGATGGTGG AAGATGGGATTGAAAGCAATCTCTGATGGCAAATTGGCTGTTGTGCTATTATCTGGTGGCCAGGGGACAAGGCTAGGAAGTTCAGATCCAAAAGGATGTT TCAATATAGCGCTTCCATCTGGCAAATCACTCTTTCAACTTCAAGCTGAGCGAATTTTGTGTGTCCAAAGATTAGCAGCCCAAGCTTCAAGTGAAGGTTC TGGAAGCTCAGTTTCGATACATTGGTACATAATGACCAGCCCGTTTACTCATGATTCCACACGATTTTTTTTTGAAAATCACAAGTACTTCGGCCTTGAA GCAGATCAGGTTACCTTCTTCCAGCAAGGCACCATACCTTGTGTTTCCAAGGATGGCAGATTTATCATGGAGACTCCATTTAGGGTAGCTAAGGCTCCGG ATGGGAATGGAGGAGTATATTCAGCGCTGAAATATTCAAAATTATTAGAGGATATGGCCTCAAGAGGGATCAAGTACGTGGACTGCTATGGGGTTGACAA CGCACTGGTACGTGTAGCTGATCCAGCTTTTTTGGGATATTTCATTGATAAAGGTGTAGCAGCTGCAGCAAAAGTTGTTCGTAAGGCATACCCCCAAGAA AAGGTTGGTGTTTTTGTAAGGCAAGGTAAAGGTGGACCTCTTACCGTGGTTGAATACAGTGAGCTGGATCAGTCACTGGCTTCTGCAGTTAATCAACAAA CTGGACGCCTTCGTTTTTGTTGGAGTAATGTGTGCTTGCACATGTTCTCTTTGGATTTTCTAAACCAAGTAGCAAATGGCCTTGAGAAAGACAGCATTTA CCATCTAGCTGAGAAAAGAATTCCTTCTATTCATGGTGATACGATGGGATTAAAACTAGAGCAATTCATATTCGATGCATTCCCATATGCTCCTTCAACA GCTCTTTTTGAGGTACCACGTGAAGAAGAATTTGCACCTGTAAAAAATGCCAATGGGTCAAATTTTGACACTCCTGAGAGTGCTCGGCTGCTTGTTCTTC GACTGCATTCTCGCTGGGTGGTTGCAGCAGGTGGCTTCTTAACACATTCGGTGCCTTTATATGCAACTGGTGTGGAGGTATCACCACTTTGCTCTTATGC TGGCGAAAATCTAGAGGCCATATGCCGGGGAAGAACATTTCACGCACCTTGTGAGATTACATTCTAG
AA sequence Show only first row Show all	>Potri.003G074700.1 pacid=42784489 polypeptide=Potri.003G074700.1.p locus=Potri.003G074700 ID=Potri.003G074700.1.v4.1 annot-version=v4.1 MREPIETNNGSPPPLPPQALLERLKDYGQEDAFALWDELSTEERELLVKDIESLDLPRLDRIIRCSLRSQGLPAAAIEPVPENTVSTVEDRTIEERERWW KMGLKAISDGKLAVVLLSGGQGTRLGSSDPKGCFNIALPSGKSLFQLQAERILCVQRLAAQASSEGSGSSVSIHWYIMTSPFTHDSTRFFFENHKYFGLE ADQVTFFQQGTIPCVSKDGRFIMETPFRVAKAPDGNGGVYSALKYSKLLEDMASRGIKYVDCYGVDNALVRVADPAFLGYFIDKGVAAAAKVVRKAYPQE KVGVFVRQGKGGPLTVVEYSELDQSLASAVNQQTGRLRFCWSNVCLHMFSLDFLNQVANGLEKDSIYHLAEKRIPSIHGDTMGLKLEQFIFDAFPYAPST ALFEVPREEEFAPVKNANGSNFDTPESARLLVLRLHSRWVVAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAICRGRTFHAPCEITF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35020		GlcNAc1pUT2	N-acetylglucosamine-1-phosphat...		Potri.003G074700 [exp]	0	1
AT1G12000			Phosphofructokinase family pro...		Potri.011G015900 [exp]	1.41	0.9692
AT3G43190		ATSUS4, SUS4	ARABIDOPSIS THALIANA SUCROSE S...		Potri.006G136700 [exp]	2.00	0.9639	Pt-SUS1.1
AT1G12000			Phosphofructokinase family pro...		Potri.006G281900 [exp]	3.00	0.9564
AT5G53340			Galactosyltransferase family p...		Potri.003G136000 [exp]	4.47	0.9491
AT1G77280			Protein kinase protein with ad...		Potri.005G182800 [exp]	4.58	0.9337
AT2G01070			Lung seven transmembrane recep...		Potri.001G209400 [exp]	5.29	0.9549
AT1G16860			Ubiquitin-specific protease fa...		Potri.008G006000 [exp]	6.48	0.9508
AT3G59480			pfkB-like carbohydrate kinase ...		Potri.017G029000 [exp]	6.70	0.9492
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Potri.002G011800 [exp]	7.74	0.9432
AT5G62700		atgcp3, TUB3	tubulin beta chain 3 (.1)		Potri.001G272800 [exp]	8.06	0.9455

Compare expression of checked genes

Potri.003G074700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.