Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20040 520 / 0 Pectin lyase-like superfamily protein (.1) AT4G20050 394 / 2e-133 QRT3 QUARTET 3, Pectin lyase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G075500 [exp] 568 / 0 AT4G20040 546 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G075400 [exp] 566 / 0 AT4G20040 530 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G159900 [exp] 403 / 7e-137 AT4G20050 604 / 0.0 QUARTET 3, Pectin lyase-like superfamily protein (.1.2) Potri.003G074600 [exp] 400 / 8e-136 AT4G20050 602 / 0.0 QUARTET 3, Pectin lyase-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038369 [exp] 516 / 0 AT4G20040 439 / 6e-151 Pectin lyase-like superfamily protein (.1) Lus10008272 [exp] 430 / 4e-147 AT4G20040 453 / 4e-156 Pectin lyase-like superfamily protein (.1) Lus10033240 [exp] 429 / 6e-147 AT4G20040 449 / 1e-154 Pectin lyase-like superfamily protein (.1) Lus10001376 [exp] 426 / 1e-145 AT4G20040 417 / 4e-142 Pectin lyase-like superfamily protein (.1) Lus10036230 [exp] 415 / 2e-142 AT4G20040 363 / 4e-122 Pectin lyase-like superfamily protein (.1) Lus10026120 [exp] 397 / 2e-134 AT4G20040 406 / 6e-138 Pectin lyase-like superfamily protein (.1) Lus10036231 [exp] 380 / 8e-128 AT4G20050 493 / 2e-172 QUARTET 3, Pectin lyase-like superfamily protein (.1.2) Lus10038370 [exp] 272 / 1e-86 AT4G20050 386 / 3e-131 QUARTET 3, Pectin lyase-like superfamily protein (.1.2) Lus10008700 [exp] 58 / 2e-10 AT4G20040 59 / 1e-11 Pectin lyase-like superfamily protein (.1) Lus10008699 [exp] 45 / 7e-06 ND 48 / 2e-07
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G075300.1 pacid=42786991 polypeptide=Potri.003G075300.1.p locus=Potri.003G075300 ID=Potri.003G075300.1.v4.1 annot-version=v4.1 ATGGAACCTTTCTCAGCATGCTGTTTTATTGTATTAATTCTTGTACAAGGTGCGACTTGTTCCATCACACGACAGATCATGACGATAAAATTCCACAAAA AGCTACAAGAAATGGAAGGCTATCATCCTGTCAATGCTACCTTGTCATTTCCCAAGGCATCAAACACCAAAAAGAATATAGGGAGAGTATTTTATCCAAT TGGGTATGGAGCAGATCCAACTGGCGCACAAGAGAGTTGTGATGCCATAATGGATGCTTTATCCGACGCTTTTCAAGTGCAAAATGGGCTAGAATTGCTG CCTGATGTCCATGACTTGGGTGGCGTTGTGATTGACTTGCAAGGTGGAAACTACAAGATCAGCAAACCCATAAGGTTTCCTTCTGGTGGAGGCAACATTG TGGTGAAAAAAGGGACAGTGCGAGCATCGGAAACCTTTCCCGGTGATAGGCATCTTATTGAACTATGGTCACCAAAGTCTAGGATGCATAACAAAAAGGT TTATTATGAAGACATCACCTTCAGGGATATTCTCTTTGATTCAAACTATAGAGGTGGAGGGATTTTCACCATGAATTCAGTCAGAACTCGCATTAATAAT TGCTTCTTTATACACTTCACAACACAAGGGATTTTGGTCAAAGAAGGCCACGAGACCTTCATATCAAGCTCCTTCCTTGGACAGCATCCAACAATTGGCG GGGATAAAAATGAGAATAAATTTTCAGGCACTGCCATTGATCTTGAAAGTAATGATAATTCAATCACTGATGTTGTAGTTTTCTCAGCAGCCATTGGTGT TCTATTAAGAGGAGAGGCAAATATTCTGACAGGGGTGCATTGTTACAACAAGGCTAATGTTTTTGGTGGCATAGGAATTATAGTAAAACCAACTGCATTT TTAACTAGGATAACCAATTGTTACTTAGATTTCACCAATATTGTCATGGAAGACCCAGTTCAAGTTCAAGTCACAAATGGGCTGTTCATTGGAGATGCCT ATATAGTTTTACAGTCAATCAATGGCAAAATCTCTGGATTAAACATTGTGGACAACATGTTTAAAGGGGAAGGCAGAAACTTGAACCCAATAGTGGAATT AGATGGAAATTTCACTATAATTGATCAAGTGGTGATTGAACGTAACAATGTGAGGAGCATGAGCTTGAAATCAACAGTGGGGAAACTAACTGTGGCCGGA AATGGAACGAAGTGGGTGGCAGATTTTTCGTCGGTGTTGTTATTCCCTAACAAAATTAGTAATTTCCAGTATTCGTTCTATGTTGAAGGTGTACCGACAG GGAATGTAGCGCATGCAGTGACCAATGTATCGGATAACATGGTGGTCGTGGAGAGCAACAAGGTCGTCAATGCAGTTGTTTCTGTGGTGGTTGATCAGAG TAGCATGGTTGAAGAGATCAACTACTTGTAA
AA sequence Show only first row Show all	>Potri.003G075300.1 pacid=42786991 polypeptide=Potri.003G075300.1.p locus=Potri.003G075300 ID=Potri.003G075300.1.v4.1 annot-version=v4.1 MEPFSACCFIVLILVQGATCSITRQIMTIKFHKKLQEMEGYHPVNATLSFPKASNTKKNIGRVFYPIGYGADPTGAQESCDAIMDALSDAFQVQNGLELL PDVHDLGGVVIDLQGGNYKISKPIRFPSGGGNIVVKKGTVRASETFPGDRHLIELWSPKSRMHNKKVYYEDITFRDILFDSNYRGGGIFTMNSVRTRINN CFFIHFTTQGILVKEGHETFISSSFLGQHPTIGGDKNENKFSGTAIDLESNDNSITDVVVFSAAIGVLLRGEANILTGVHCYNKANVFGGIGIIVKPTAF LTRITNCYLDFTNIVMEDPVQVQVTNGLFIGDAYIVLQSINGKISGLNIVDNMFKGEGRNLNPIVELDGNFTIIDQVVIERNNVRSMSLKSTVGKLTVAG NGTKWVADFSSVLLFPNKISNFQYSFYVEGVPTGNVAHAVTNVSDNMVVVESNKVVNAVVSVVVDQSSMVEEINYL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20040			Pectin lyase-like superfamily ...		Potri.003G075300 [exp]	0	1
					Potri.006G077750 [exp]	4.58	0.8036
					Potri.003G189601 [exp]	8.48	0.7886
AT3G24750			unknown protein		Potri.002G240300 [exp]	9.16	0.7833
AT1G65480		FT	FLOWERING LOCUS T, PEBP (phosp...		Potri.010G179900 [exp]	12.00	0.7796
AT5G17220		GST26, TT19, AT...	TRANSPARENT TESTA 19, GLUTATHI...		Potri.017G138800 [exp]	16.24	0.7776	ATGSTF10.1
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Potri.017G125600 [exp]	16.73	0.7785
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Potri.018G094800 [exp]	21.00	0.7706
AT1G64320			myosin heavy chain-related (.1...		Potri.003G137300 [exp]	21.74	0.7576
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Potri.004G155400 [exp]	21.90	0.7702
AT4G36970			Remorin family protein (.1)		Potri.007G044350 [exp]	21.93	0.7475

Compare expression of checked genes

Potri.003G075300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.