Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20040 530 / 0 Pectin lyase-like superfamily protein (.1) AT4G20050 414 / 1e-141 QRT3 QUARTET 3, Pectin lyase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G075500 [exp] 598 / 0 AT4G20040 546 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G075300 [exp] 577 / 0 AT4G20040 521 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G074600 [exp] 430 / 4e-148 AT4G20050 602 / 0.0 QUARTET 3, Pectin lyase-like superfamily protein (.1.2) Potri.001G159900 [exp] 426 / 2e-146 AT4G20050 604 / 0.0 QUARTET 3, Pectin lyase-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038369 [exp] 499 / 2e-175 AT4G20040 439 / 6e-151 Pectin lyase-like superfamily protein (.1) Lus10033240 [exp] 449 / 3e-155 AT4G20040 449 / 1e-154 Pectin lyase-like superfamily protein (.1) Lus10008272 [exp] 440 / 1e-151 AT4G20040 453 / 4e-156 Pectin lyase-like superfamily protein (.1) Lus10001376 [exp] 434 / 1e-149 AT4G20040 417 / 4e-142 Pectin lyase-like superfamily protein (.1) Lus10036231 [exp] 401 / 5e-137 AT4G20050 493 / 2e-172 QUARTET 3, Pectin lyase-like superfamily protein (.1.2) Lus10026120 [exp] 398 / 2e-135 AT4G20040 406 / 6e-138 Pectin lyase-like superfamily protein (.1) Lus10036230 [exp] 389 / 2e-132 AT4G20040 363 / 4e-122 Pectin lyase-like superfamily protein (.1) Lus10038370 [exp] 304 / 1e-99 AT4G20050 386 / 3e-131 QUARTET 3, Pectin lyase-like superfamily protein (.1.2) Lus10008700 [exp] 62 / 5e-12 AT4G20040 59 / 1e-11 Pectin lyase-like superfamily protein (.1) Lus10008699 [exp] 46 / 5e-06 ND 48 / 2e-07
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G075400.2 pacid=42786497 polypeptide=Potri.003G075401.1.p locus=Potri.003G075400 ID=Potri.003G075400.2.v4.1 annot-version=v4.1 ATGCGTGTTTTTTTGAAGGAGAGAGTATTTTATCCAATTAAATATGGGGCGGACCCAACTGGGGAGCGAGACAGCAGTGATGCCATATTGAAAGCTTTAA GCTACGCATTTCAAGTGCAAAATGAGCTTGAGTTGTTGCCTGGCATCAATGACTTGGCTGGTGTTGTGATTGATTTGCAGGGTGGAAACTACAAAATCAG TAAACCCATTAGGTTTCCAGCTGGTGGAGGCAATATCCTGGTACACGCGGGAACTTTGCGGGCATCTGACGATTTTCCAAGCGATCGTTACCTCGTTGAA CTGTGGTCACCAAGTTCTACGGTTGTTCCCAAACCTTCCAATATCCATCCCGACGGGGGAGAGAAAAAAAATGTTGGGATATACTACGAGGACGTCACCT TTCGGGACATCCTGTTCGATTCAAGCTATCGCGGAGGGGGAATGTTCATAATTGATTCAGCAAGAACTCGCATACATAATTGCTTCTTTATCCACTTCAC AACCGAAGGAATTCTAGTCCAAAAGGGCCACGAGACCTTCATATCAAGTTGTTTCCTAGGTCAACATGTAACAATTGGTGGTGATCCAAAAGAAAAAAAC TATACCGGAACTGCCATTGATCTTGCAAGTAATGATAATGCAATCACAGATGTTGCCATTTTCTCAGCTGCTATTGGAGTATTATTAAGGGGTCAAGCTA ACATTCTTACCGGGGTACACTGCTACAACAAGGCAACTGGGTTCGGTGGCGTAGGGATTTTAGTGAAACCACAAGGATCCTTGACTAGGATGGATAATTG TTACTTAGATTGGACAGCTATAGTCATTGAAGATCCTGTTCAAATTCATGTGACTAATGGTTTCTTCTTGGGAGATGCTAACGTAGTGTTAAAAGCAGCC AAGGGTAAAATGTCCGGGGTAACCATTGTGGATAATATGTTCAAATCGGATGCAAATTCTATGAATCCTATTGTTCAATTAGATGGGAATTTTGCTAGCA TTGATCAAGTGGTGATCGATAACAACAATGCCGTCGGTATGACCGTGAAATCAACGGCCGGGAAGTTAACAGTGCCTGGAAATGGGACAAAATGGGTGGC AGACTTTTCATCCATATTAGTATTCCCAGATCGGATTAATCATTTCCAGTACTCTTTCAATTTTCAAGGGGTTCCTGTGGCATTCCCAGCACACGGAGTG ACCAGTTTATCAAACAATGTGGTGGTTGTCGAGAGTGACAGAAGTGTTAATGGAGTAGTTTCTGTTGCTGTTGATCAGTATAATAGGAAGGGAGAGTAG
AA sequence Show only first row Show all	>Potri.003G075400.2 pacid=42786497 polypeptide=Potri.003G075401.1.p locus=Potri.003G075400 ID=Potri.003G075400.2.v4.1 annot-version=v4.1 MRVFLKERVFYPIKYGADPTGERDSSDAILKALSYAFQVQNELELLPGINDLAGVVIDLQGGNYKISKPIRFPAGGGNILVHAGTLRASDDFPSDRYLVE LWSPSSTVVPKPSNIHPDGGEKKNVGIYYEDVTFRDILFDSSYRGGGMFIIDSARTRIHNCFFIHFTTEGILVQKGHETFISSCFLGQHVTIGGDPKEKN YTGTAIDLASNDNAITDVAIFSAAIGVLLRGQANILTGVHCYNKATGFGGVGILVKPQGSLTRMDNCYLDWTAIVIEDPVQIHVTNGFFLGDANVVLKAA KGKMSGVTIVDNMFKSDANSMNPIVQLDGNFASIDQVVIDNNNAVGMTVKSTAGKLTVPGNGTKWVADFSSILVFPDRINHFQYSFNFQGVPVAFPAHGV TSLSNNVVVVESDRSVNGVVSVAVDQYNRKGE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20040			Pectin lyase-like superfamily ...		Potri.003G075400 [exp]	0	1
AT2G03240			EXS (ERD1/XPR1/SYG1) family pr...		Potri.006G035100 [exp]	1.00	0.8603
AT5G23260	MADS	ABS, TT16, AGL3...	TRANSPARENT TESTA16, AGAMOUS-l...		Potri.015G125501 [exp]	8.66	0.8096
					Potri.008G045166 [exp]	8.94	0.8449
					Potri.017G142966 [exp]	11.40	0.7478
					Potri.012G120952 [exp]	22.18	0.8088
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.001G440200 [exp]	33.76	0.7940
					Potri.012G120860 [exp]	34.05	0.7961
AT5G07610			F-box family protein (.1)		Potri.006G071100 [exp]	35.28	0.7673
AT3G30210	MYB	ATMYB121	myb domain protein 121 (.1)		Potri.004G115600 [exp]	37.14	0.7576
					Potri.012G120768 [exp]	38.18	0.7942

Compare expression of checked genes

Potri.003G075400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.