Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20040 547 / 0 Pectin lyase-like superfamily protein (.1) AT4G20050 391 / 4e-132 QRT3 QUARTET 3, Pectin lyase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G075400 [exp] 615 / 0 AT4G20040 530 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G075300 [exp] 593 / 0 AT4G20040 521 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G074600 [exp] 408 / 1e-138 AT4G20050 602 / 0.0 QUARTET 3, Pectin lyase-like superfamily protein (.1.2) Potri.001G159900 [exp] 405 / 2e-137 AT4G20050 604 / 0.0 QUARTET 3, Pectin lyase-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038369 [exp] 489 / 2e-170 AT4G20040 439 / 6e-151 Pectin lyase-like superfamily protein (.1) Lus10033240 [exp] 441 / 5e-151 AT4G20040 449 / 1e-154 Pectin lyase-like superfamily protein (.1) Lus10008272 [exp] 438 / 5e-150 AT4G20040 453 / 4e-156 Pectin lyase-like superfamily protein (.1) Lus10026120 [exp] 421 / 4e-143 AT4G20040 406 / 6e-138 Pectin lyase-like superfamily protein (.1) Lus10001376 [exp] 419 / 8e-143 AT4G20040 417 / 4e-142 Pectin lyase-like superfamily protein (.1) Lus10036230 [exp] 392 / 3e-133 AT4G20040 363 / 4e-122 Pectin lyase-like superfamily protein (.1) Lus10036231 [exp] 392 / 2e-132 AT4G20050 493 / 2e-172 QUARTET 3, Pectin lyase-like superfamily protein (.1.2) Lus10038370 [exp] 293 / 1e-94 AT4G20050 386 / 3e-131 QUARTET 3, Pectin lyase-like superfamily protein (.1.2) Lus10008700 [exp] 59 / 1e-10 AT4G20040 59 / 1e-11 Pectin lyase-like superfamily protein (.1) Lus10008699 [exp] 51 / 1e-07 ND 48 / 2e-07
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF13229 [poplar] [flax] Beta_helix Right handed beta helix region
Representative CDS sequence Show only first row Show all	>Potri.003G075500.2 pacid=42786667 polypeptide=Potri.003G075500.2.p locus=Potri.003G075500 ID=Potri.003G075500.2.v4.1 annot-version=v4.1 ATGGCCTTAAAAAACATCTCAACGCTGTGCTTCCTTTTGTTGTGGTCGGTGCAAGAAACAACTTGTTTCATCAAGAAACATAAGCTGATAGAATTCCAAG CAAAGCTTCAAGAAATGGTGGCCTCAAGCAGTCCCATTCCACCACCTTCCCCGGCCGTCTCACAAACCAAACAGAGTGGGAGAGTGTTTTATCCAATTGG CTATGGAGCGGATCCAACTGGGGTTCAAGACAGCAGAGATGCCATATTAAATGCTTTGAATGATGCCTTTCAAGTGCAAAATGGGCTTCAGTTGCTCCCT GGTGTGAATGACTTGGGTGGTGTTGTAATTGATTTGCAAGGTGGAAACTACAAGATCAGCATGCCCCTCAGATTTCCTGCTTCTGGTGGAGGCAACGTTG TGGTAAAAGGAGGAACTTTGCGAGCATCGGACATATTTCCTGGCGATCGGCATCTCATAGAAGTATGGTCACAGAATTCTCAAGTACTTGATAAAAGAAA CAAGGTACATGATCCAAATGGTTTCTCTGCTGGAAAATTACAAAATGGCGCCATCCTCTATGAGGACATCACCTTCCGTGACATCCTTTTCGATTCGGGA TATAGAGGAGGAGGGATTTTCGTTGTCAATTCAGCCAGAATTCGAATTAACAATTGCTTCTTTTTACACTTCACAACAGAAGGAATTTTAGTCCAAGGAG GCCATGAGACCTTCATATCTAGCTGCTTCCTAGGACAACATTCTACAGTTGGAGGGGATCCAGGTGAGAGAAATTTTTCAGGCACCGCAATTGACCTTGG GAGCAATGATAATGCAATCACAGATGTTGCTCTGTTTTCAGCAGCCATTGGTGTGTTATTAAGGGGTCAGGCTAACATTCTCACAGGGATACACTGCTAT AACAAGGCAACCGGCTTTGGTGGTGTAGGAATTATGGTGAAATTATACGCATCACTGACTAGGATAGATAATTGTTACTTGGATTATAATTCTATAGTCA TGGAAGACCCTGTTCAAGTTCATGTTACTAACGGGCTATTCTTGGGAGAGGGCAATATAGTTTTAAAAGCGATCAATGGCAAAATTTCTGGAGTAAATAT TGTGAATAATATGTTCAACGCAGATCCAAAAGGTACGACTCCTATTGTAGGATTAGATGGGACATTTACTAGTATTGATCAAGTGCTCATTGATCAGAAT GATGTAGTGAGTGGCATGAAATACAAATCAACAGTGGGGAAGCTAACAGTGGCCGGAAATGCAACGAAATGGGTCGCAGATTTTTCTTCGGTTTTGTTGT TTCCTAACCAGATTAATCATTTTCAGTACTCATTTTACATTCACGGAATGCCTAATGGGTTCCCAATTCATGCAATAACAAATGTGTCAAATAATGTAGT TGTCGTGGAGAGTGACAAATTGGTCAATGCTGTGGTTTCTGTGATTGTTGATCAATGTAATATGGCTGGTGAGAGTAATGTTATGTAA
AA sequence Show only first row Show all	>Potri.003G075500.2 pacid=42786667 polypeptide=Potri.003G075500.2.p locus=Potri.003G075500 ID=Potri.003G075500.2.v4.1 annot-version=v4.1 MALKNISTLCFLLLWSVQETTCFIKKHKLIEFQAKLQEMVASSSPIPPPSPAVSQTKQSGRVFYPIGYGADPTGVQDSRDAILNALNDAFQVQNGLQLLP GVNDLGGVVIDLQGGNYKISMPLRFPASGGGNVVVKGGTLRASDIFPGDRHLIEVWSQNSQVLDKRNKVHDPNGFSAGKLQNGAILYEDITFRDILFDSG YRGGGIFVVNSARIRINNCFFLHFTTEGILVQGGHETFISSCFLGQHSTVGGDPGERNFSGTAIDLGSNDNAITDVALFSAAIGVLLRGQANILTGIHCY NKATGFGGVGIMVKLYASLTRIDNCYLDYNSIVMEDPVQVHVTNGLFLGEGNIVLKAINGKISGVNIVNNMFNADPKGTTPIVGLDGTFTSIDQVLIDQN DVVSGMKYKSTVGKLTVAGNATKWVADFSSVLLFPNQINHFQYSFYIHGMPNGFPIHAITNVSNNVVVVESDKLVNAVVSVIVDQCNMAGESNVM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20040			Pectin lyase-like superfamily ...		Potri.003G075500 [exp]	0	1
AT2G24610		ATCNGC14	cyclic nucleotide-gated channe...		Potri.006G271480 [exp]	8.36	0.7557
					Potri.008G017550 [exp]	9.89	0.7207
AT2G24350			RNA binding (RRM/RBD/RNP motif...		Potri.006G079800 [exp]	26.09	0.6312
AT5G45530			Protein of unknown function (D...		Potri.015G113500 [exp]	32.18	0.7290
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.006G110000 [exp]	59.45	0.6603
AT2G32280			Protein of unknown function (D...		Potri.007G119600 [exp]	89.88	0.6897
AT2G17900		ASHR1, SDG37	ASH1-related 1, SET domain gro...		Potri.005G173100 [exp]	103.11	0.6821	SDG944,SDG37.1
AT2G20060			Ribosomal protein L4/L1 family...		Potri.006G270501 [exp]	116.83	0.6813
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Potri.004G061500 [exp]	165.29	0.6353
AT5G22920			CHY-type/CTCHY-type/RING-type ...		Potri.009G005700 [exp]	188.14	0.6461

Compare expression of checked genes

Potri.003G075500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.