Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31040 306 / 1e-105 PLATZ transcription factor family protein (.1) AT2G12646 196 / 4e-62 PLATZ transcription factor family protein (.1) AT3G60670 192 / 1e-60 PLATZ transcription factor family protein (.1) AT1G43000 132 / 8e-38 PLATZ transcription factor family protein (.1) AT1G76590 133 / 1e-37 PLATZ transcription factor family protein (.1) AT1G21000 131 / 6e-37 PLATZ transcription factor family protein (.1.2) AT1G32700 125 / 4e-35 PLATZ transcription factor family protein (.1.2) AT4G17900 124 / 2e-34 PLATZ transcription factor family protein (.1.2) AT2G01818 120 / 4e-33 PLATZ transcription factor family protein (.1) AT2G27930 118 / 1e-32 PLATZ transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G159200 [exp] 430 / 1e-154 AT1G31040 294 / 3e-101 PLATZ transcription factor family protein (.1) Potri.006G060500 [exp] 206 / 4e-66 AT2G12646 321 / 1e-111 PLATZ transcription factor family protein (.1) Potri.018G116000 [exp] 202 / 1e-64 AT2G12646 318 / 2e-110 PLATZ transcription factor family protein (.1) Potri.014G059300 [exp] 196 / 3e-62 AT3G60670 238 / 6e-79 PLATZ transcription factor family protein (.1) Potri.002G144900 [exp] 191 / 3e-60 AT3G60670 250 / 7e-84 PLATZ transcription factor family protein (.1) Potri.009G003200 [exp] 132 / 5e-38 AT2G27930 227 / 3e-76 PLATZ transcription factor family protein (.1) Potri.002G002200 [exp] 131 / 3e-37 AT1G21000 365 / 2e-129 PLATZ transcription factor family protein (.1.2) Potri.005G259000 [exp] 131 / 5e-37 AT1G21000 366 / 1e-129 PLATZ transcription factor family protein (.1.2) Potri.013G078500 [exp] 130 / 8e-37 AT4G17900 312 / 1e-108 PLATZ transcription factor family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036226 [exp] 197 / 3e-63 AT1G31040 191 / 3e-61 PLATZ transcription factor family protein (.1) Lus10008814 [exp] 186 / 5e-58 AT2G12646 301 / 4e-103 PLATZ transcription factor family protein (.1) Lus10039989 [exp] 184 / 1e-56 AT2G12646 292 / 3e-99 PLATZ transcription factor family protein (.1) Lus10009283 [exp] 181 / 2e-56 AT3G60670 249 / 2e-83 PLATZ transcription factor family protein (.1) Lus10015881 [exp] 177 / 7e-55 AT3G60670 251 / 4e-84 PLATZ transcription factor family protein (.1) Lus10008031 [exp] 166 / 3e-50 AT2G12646 294 / 1e-100 PLATZ transcription factor family protein (.1) Lus10038103 [exp] 160 / 5e-48 AT2G12646 289 / 1e-98 PLATZ transcription factor family protein (.1) Lus10038365 [exp] 157 / 2e-47 AT1G31040 142 / 9e-42 PLATZ transcription factor family protein (.1) Lus10040292 [exp] 137 / 2e-39 AT1G21000 317 / 3e-110 PLATZ transcription factor family protein (.1.2) Lus10023411 [exp] 140 / 3e-39 AT1G21000 313 / 7e-107 PLATZ transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04640 [poplar] [flax] PLATZ PLATZ transcription factor
Representative CDS sequence Show only first row Show all	>Potri.003G075600.1 pacid=42787373 polypeptide=Potri.003G075600.1.p locus=Potri.003G075600 ID=Potri.003G075600.1.v4.1 annot-version=v4.1 ATGGTGAGAGAGAGAAGGTACAATTATAATAATAGTAATCATAATAATACATCATCAAGGAGCAGAAATGGAGTTGGAGGTGGTGATGATGATGATGAAA TGATGATGATGATGAGCAGTAAGAGTATGAAGCCTGCATGGCTAGAAGGATTGATGGCAGAGACATTCTTCGGAGGTTGTGGGGTCCACGAGAGTCGCAG AAAGAATGAGAAGAACGTCTTTTGCTTGCTCTGTTGCCTTAGTATCTGCCCTCACTGCCTTCCTTCTCATCGCTCTCATCCCCTCCTCCAGGTGAGAAGA TATGTTTACCATGATGTTGTTCGATTGGGGGATCTTGAGAAGCTCATTGACTGTTCTTATATTCAGCCCTATACAATAAACAGTGCCAAAGTGATATTCT TGAATCAGAGACCACAGTCAAGATCCTGCAAGGGTTCATCCAACAATTGCTTCACTTGCGACAGGATACTCCAAGATCCATTCCATTTCTGCTCTCTCTC ATGCAAGGTTAATCACTTGGTGGATCAAGGGGATGATCTCTCGGCTATTCTTTACAGGATTGATGAATCTGATTTTGCATTTTCCCAATTTGAGGGATTG AGGATGGACGGCTCTGAAATTATTGATGATGATGGTCAAATTACCCCGAGCTCCATTTTTGAGAACCCATCACAACACAGAGGCTCGTCATGCTCCAATG AACCGGAGGTCCTAGGAAAGAAGGAGAAAAAAAGTGGCTTTCTTCCGGGGAATTTCTTCTCTCTGAGCAGCAGGAGAAAGGGATCTCCTCATAGGGCTCC TCTCTCGTAA
AA sequence Show only first row Show all	>Potri.003G075600.1 pacid=42787373 polypeptide=Potri.003G075600.1.p locus=Potri.003G075600 ID=Potri.003G075600.1.v4.1 annot-version=v4.1 MVRERRYNYNNSNHNNTSSRSRNGVGGGDDDDEMMMMMSSKSMKPAWLEGLMAETFFGGCGVHESRRKNEKNVFCLLCCLSICPHCLPSHRSHPLLQVRR YVYHDVVRLGDLEKLIDCSYIQPYTINSAKVIFLNQRPQSRSCKGSSNNCFTCDRILQDPFHFCSLSCKVNHLVDQGDDLSAILYRIDESDFAFSQFEGL RMDGSEIIDDDGQITPSSIFENPSQHRGSSCSNEPEVLGKKEKKSGFLPGNFFSLSSRRKGSPHRAPLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G31040			PLATZ transcription factor fam...		Potri.003G075600 [exp]	0	1
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Potri.019G014409 [exp]	2.00	0.7770
					Potri.015G111101 [exp]	10.39	0.7687
AT5G28490		OBO2, LSH1	ORGAN BOUNDARY 2, LIGHT-DEPEND...		Potri.019G018600 [exp]	14.49	0.7255
AT3G44830			Lecithin:cholesterol acyltrans...		Potri.004G190100 [exp]	17.29	0.6866
AT5G28490		OBO2, LSH1	ORGAN BOUNDARY 2, LIGHT-DEPEND...		Potri.013G046500 [exp]	23.23	0.6958
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Potri.013G077500 [exp]	26.26	0.6163
AT1G68130	C2H2ZnF	IDD14beta, IDD1...	indeterminate(ID)-domain 14 (....		Potri.008G140400 [exp]	27.56	0.7254
					Potri.005G135601 [exp]	28.42	0.7683
AT3G22810			Plant protein of unknown funct...		Potri.008G157000 [exp]	30.57	0.7146
AT4G27290			S-locus lectin protein kinase ...		Potri.011G037000 [exp]	31.62	0.7151

Compare expression of checked genes

Potri.003G075600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.