Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RAN1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44790 1526 / 0 HMA7, RAN1 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) AT1G63440 867 / 0 HMA5 heavy metal atpase 5 (.1) AT5G21930 364 / 8e-111 ATHMA8, HMA8, PAA2 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) AT4G33520 358 / 3e-108 AtHMAC6, HMA6, PAA1 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) AT4G30110 269 / 7e-76 ATHMA2, HMA2 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1) AT2G19110 244 / 9e-67 ATHMA4, HMA4 ARABIDOPSIS HEAVY METAL ATPASE 4, heavy metal atpase 4 (.1) AT4G30120 175 / 3e-46 ATHMA3, HMA3 A. THALIANA HEAVY METAL ATPASE 3, heavy metal atpase 3 (.1) AT4G37270 143 / 1e-34 ATHMA1, HMA1 ARABIDOPSIS THALIANA HEAVY METAL ATPASE 1, heavy metal atpase 1 (.1) AT3G57330 136 / 2e-32 ACA11 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) AT2G41560 130 / 2e-30 ACA4 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G158900 [exp] 1823 / 0 AT5G44790 1465 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Potri.001G105800 [exp] 881 / 0 AT1G63440 1538 / 0.0 heavy metal atpase 5 (.1) Potri.003G125600 [exp] 879 / 0 AT1G63440 1527 / 0.0 heavy metal atpase 5 (.1) Potri.001G019100 [exp] 833 / 0 AT1G63440 1043 / 0.0 heavy metal atpase 5 (.1) Potri.003G125700 [exp] 833 / 0 AT1G63440 1395 / 0.0 heavy metal atpase 5 (.1) Potri.018G047800 [exp] 374 / 1e-113 AT5G21930 1193 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) Potri.003G024000 [exp] 355 / 1e-106 AT4G33520 1078 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Potri.001G205400 [exp] 341 / 9e-102 AT4G33520 1066 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Potri.006G076900 [exp] 280 / 8e-79 AT4G30110 1051 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038364 [exp] 1530 / 0 AT5G44790 1441 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10036225 [exp] 1491 / 0 AT5G44790 1402 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10008309 [exp] 845 / 0 AT1G63440 1491 / 0.0 heavy metal atpase 5 (.1) Lus10031273 [exp] 770 / 0 AT1G63440 1040 / 0.0 heavy metal atpase 5 (.1) Lus10031840 [exp] 467 / 2e-149 AT5G44790 573 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10023777 [exp] 322 / 1e-94 AT4G33520 1180 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Lus10025467 [exp] 274 / 1e-77 AT4G30110 1073 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1) Lus10006955 [exp] 271 / 2e-76 AT2G19110 1072 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 4, heavy metal atpase 4 (.1) Lus10038070 [exp] 258 / 2e-72 AT5G21930 1146 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) Lus10009789 [exp] 157 / 7e-41 AT5G21930 447 / 1e-149 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase PF00403 [poplar] [flax] HMA Heavy-metal-associated domain CL0137 [poplar] [flax] HAD PF12710 [poplar] [flax] HAD haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.003G075700.1 pacid=42785622 polypeptide=Potri.003G075700.1.p locus=Potri.003G075700 ID=Potri.003G075700.1.v4.1 annot-version=v4.1 ATGAGAGACCTACAGCTGACCCAGGTGGCCGGCACCCGGCAATCCCCTCTGGCTATGGTTTACACCGATGACATGATGGAGGATGTTAGGCTTCTTGATT CCTGTGAAAGCCGGGACGATCATAATGACGGTTCGCATGCAATTGTGATTGGAGAAGTTGGGTCTAAGAGAATTCAAGTGAGAGTTACAGGGATGACTTG TGCTGCTTGTTCCAATTCTGTTGAATCAGCATTGAAGAGTGTTCATGGGGTTTTCAGAGCTTCTGTTGCTTTGCTTCAAAATAAAGCTGACGTCGTATTC GACCCTGCTTTGGTTAAGGACGATGATATCAAGAATGCAATTGAGGATGCAGGTTTTGAAGCAGAGATTCTATCTGAACCTAGTATATTAAAAACAAAGC CAAATGGAACCCTTTTGGGGCAATTCACAATTGGAGGTATGACCTGTGCAGCCTGTGTGAACTCTGTTGAAGGTATTTTGAGAAATTGTCCTGGTGTCAA AAGGGCTGTGGTGGCGTTGGCTACTTCTTTAGGGGAAGTTGAGTATGACCCTACTGTAATTAGCAAAGATGATATAGTGAATGCTATTGAAGATGCAGGC TTTGATGCATCTCTTGTACAGAGTAGTCAACAGGATAAAATCTTACTAGGAGTTGCTGGGATATTCAGTGAGATGGATGTGCAGCTTTTAGAGGGAATAC TGATAATGCTTAAAGGAGTACGGCAATTCCGTTACAACCAGTTATCCAGTGAACTAGAAGTTCTCTTTGACCCTGAAGTTGTAGGTTCTAGATCCTTGGT TGATGGAGTTGAGGGAGGGAGCAATGGGAAGTTCAAATTACATGTCATTAACCCTTACTCAAGAATGACTTCTAAGGATGTTGGAGAAATTTCTGTTATG TTTCGACTTTTCATTTCCAGCCTGTTTCTTAGTATTCCCATCTTTTTCATGCGAGTAATTTGTCCTCACATACCACTGCTGTATTCCTTGCTACTCTGGC GCTGTGGACCCTTCCTAATGGGTGATTGGTTAAAGTGGGCATTGGTGAGTGTTGTTCAATTTGTAATTGGGAAGCGGTTCTATGTGGCAGCTGGTAGAGC CCTTCGAAATGGTTCAACCAACATGGATGTTTTAGTTGCATTGGGAACTTCAGCCTCGTACTTCTACTCTGTTTGTGCGCTCCTATATGGTGCAGTCACT GGCCTTTGGTCCCCAACATACTTTGAAACAAGTTCCATGCTGATAACATTTGTATTGTTGGGAAAGTATTTGGAGTGCCTTGCCAAGGGAAAAACGTCAG ATGCCATCAAGAAGCTAGTACAACTTGCTCCAGCAACAGCACTGCTGGTTGTCAAAGACAAAGGTGGAAAGAGCATTGGAGAAAGGGAGATAGATTCATT ACTTATTCAGCCTGGTGACATATTAAAAGTTCCTCCTGGTACCAAAGTTCCTGCAGACGGTGTTGTTGTATGGGGTTCAAGTCATGTTAATGAAAGCATG GTAACTGGTGAATCTGCTCCTGTTCTGAAGGAAGCTAGTTCATCAGTTATTGGAGGTACAATAAATTTACATGGTGCTCTTCACATACAAGCTACTAAAG TAGGATCAGATGCTGTATTGAGCCAGATAATTAGTTTGGTTGAGACAGCCCAGATGTCCAAAGCTCCAATACAGAAATTTGCAGATTATGTGGCAAGCAT TTTTGTTCCTACAGTTGTTGGATTGGCTCTAGTCACATTGTTTAGCTGGTACATTAGTGGAATTTCTGGAGCTTACCCGGAAGAATGGCTTCCAGAAAAT GGCAATTACTTTGTTTTTTCCCTCATGTTTTCGATCTCAGTGGTGGTGATTGCATGTCCGTGTGCACTTGGTCTGGCAACACCAACTGCTGTCATGGTTG CTACTGGGGTTGGTGCTAACCATGGTGTGCTGATAAAAGGAGGAGATGCTTTGGAAAGGGCTCAGAAGATTAAGTATGTGATATTGGATAAAACAGGTAC TCTAACCCAGGGAAAAGCCACAGTAACTGATGTAAAAGTTTTCACTGGAATGGGTCGTGGAGAATTTCTCAGATGGGTGGCTTCTGCAGAGGCTAGCAGT GAACATCCATTGGCAAAAGCAATTGTGGAACATGCACGCCATTTCCATTCCTTTGATGAACCTCCTGCAACCAATGATGGCCAAACCCCCAGCAAAGGGT CTACAATCTCTGGGTGGCTTCTTGATGTCTCAGACTTCTTGGCTCATCCTGGAAGTGGTGTGAAGTGCTTCATAGATGGAAAACGAATTTTGGTTGGTAA CCGGAAACTGATGACTGAAAGTGGAATTGCCATTCCAGACCAAGTAGAAAATTTTGTAGTAGAGCTCGAAGAAAGTGCAAAGACAGGTGTCCTTGTTGCA TTTGATGACAACATAATTGGTATTTTGGGGATTGCAGATCCATTAAAGAGAGAAGCTGCTGTAGTAATCGAGGGCCTTCTGAAAATGGGTGTCAAACCAG TCATGGTGACAGGGGATAATTGGAGGACAGCACGCGCAGTTGCTAAGGAGGTGGGCATTCAAGATGTTAGGGCTGAAGTAATGCCAGCTGGCAAAGCCGA TGTTATCCAGTCTTTTCAAAAGGATGGAAGCATAGTAGCAATGGTGGGTGATGGCATCAATGACTCTCCTGCTCTTGCTGCTGCAGATGTTGGCATGGCT ATTGGTGCGGGGACAGATATCGCCATAGAAGCTGCTGACTATGTCTTGATGAGGAATAACTTGGAGGATGTAATCACAGCCATTGATCTCTCAAGAAAAA CCTTCTCTCGCATTAGATTGAATTATATTTTTGCCATGGGTTACAATGTGATCGCAATACCTATTGCTGCTGGGATGTTCTTTCCTTCCCTAGGGATCAT GCTGCCACCATGGGCAGCCGGTGCTTGCATGGCTCTTTCATCTGTAAGTGTTGTATGCTCGTCTTTACTTCTTAGAAGATATAGAAAACCCAGACTTACC ACCATCTTGGAAATAACTGTAGATTAG
AA sequence Show only first row Show all	>Potri.003G075700.1 pacid=42785622 polypeptide=Potri.003G075700.1.p locus=Potri.003G075700 ID=Potri.003G075700.1.v4.1 annot-version=v4.1 MRDLQLTQVAGTRQSPLAMVYTDDMMEDVRLLDSCESRDDHNDGSHAIVIGEVGSKRIQVRVTGMTCAACSNSVESALKSVHGVFRASVALLQNKADVVF DPALVKDDDIKNAIEDAGFEAEILSEPSILKTKPNGTLLGQFTIGGMTCAACVNSVEGILRNCPGVKRAVVALATSLGEVEYDPTVISKDDIVNAIEDAG FDASLVQSSQQDKILLGVAGIFSEMDVQLLEGILIMLKGVRQFRYNQLSSELEVLFDPEVVGSRSLVDGVEGGSNGKFKLHVINPYSRMTSKDVGEISVM FRLFISSLFLSIPIFFMRVICPHIPLLYSLLLWRCGPFLMGDWLKWALVSVVQFVIGKRFYVAAGRALRNGSTNMDVLVALGTSASYFYSVCALLYGAVT GLWSPTYFETSSMLITFVLLGKYLECLAKGKTSDAIKKLVQLAPATALLVVKDKGGKSIGEREIDSLLIQPGDILKVPPGTKVPADGVVVWGSSHVNESM VTGESAPVLKEASSSVIGGTINLHGALHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADYVASIFVPTVVGLALVTLFSWYISGISGAYPEEWLPEN GNYFVFSLMFSISVVVIACPCALGLATPTAVMVATGVGANHGVLIKGGDALERAQKIKYVILDKTGTLTQGKATVTDVKVFTGMGRGEFLRWVASAEASS EHPLAKAIVEHARHFHSFDEPPATNDGQTPSKGSTISGWLLDVSDFLAHPGSGVKCFIDGKRILVGNRKLMTESGIAIPDQVENFVVELEESAKTGVLVA FDDNIIGILGIADPLKREAAVVIEGLLKMGVKPVMVTGDNWRTARAVAKEVGIQDVRAEVMPAGKADVIQSFQKDGSIVAMVGDGINDSPALAAADVGMA IGAGTDIAIEAADYVLMRNNLEDVITAIDLSRKTFSRIRLNYIFAMGYNVIAIPIAAGMFFPSLGIMLPPWAAGACMALSSVSVVCSSLLLRRYRKPRLT TILEITVD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Potri.003G075700 [exp]	0	1	RAN1.3
AT5G65170			VQ motif-containing protein (....		Potri.005G076600 [exp]	2.82	0.7799
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Potri.018G063000 [exp]	17.66	0.7359	NPH4.1
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Potri.006G127100 [exp]	20.49	0.7245
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Potri.006G128700 [exp]	21.07	0.6945
AT3G13300		VCS	VARICOSE, Transducin/WD40 repe...		Potri.016G002100 [exp]	30.04	0.7197
AT1G16800			P-loop containing nucleoside t...		Potri.010G253700 [exp]	37.28	0.7221
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Potri.007G046200 [exp]	42.98	0.7081	AP2.15,RAP2
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Potri.006G198300 [exp]	47.28	0.6733	Pt-UBP12.2
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Potri.006G077800 [exp]	47.32	0.6873
AT1G49230			RING/U-box superfamily protein...		Potri.019G010500 [exp]	51.52	0.6907

Compare expression of checked genes

Potri.003G075700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.