Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22160 54 / 8e-09 VQ motif-containing protein (.1) AT4G39720 50 / 4e-07 VQ motif-containing protein (.1) AT4G15120 47 / 2e-06 VQ motif-containing protein (.1) AT1G35830 47 / 4e-06 VQ motif-containing protein (.1) AT5G65170 45 / 2e-05 VQ motif-containing protein (.1) AT4G20000 44 / 2e-05 VQ motif-containing protein (.1) AT2G41010 41 / 0.0004 ATCAMBP25 calmodulin (CAM)-binding protein of 25 kDa (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G158800 [exp] 298 / 4e-103 AT4G39720 58 / 6e-10 VQ motif-containing protein (.1) Potri.006G006300 [exp] 57 / 1e-09 AT4G39720 49 / 2e-06 VQ motif-containing protein (.1) Potri.005G166100 [exp] 50 / 3e-07 AT5G65170 94 / 8e-21 VQ motif-containing protein (.1) Potri.005G076600 [exp] 48 / 2e-06 AT5G65170 70 / 7e-13 VQ motif-containing protein (.1) Potri.016G017900 [exp] 47 / 3e-06 AT4G15120 / VQ motif-containing protein (.1) Potri.002G094900 [exp] 45 / 3e-05 AT1G35830 89 / 1e-19 VQ motif-containing protein (.1) Potri.007G091600 [exp] 44 / 5e-05 AT5G65170 72 / 2e-13 VQ motif-containing protein (.1) Potri.016G029600 [exp] 41 / 0.0002 AT3G56880 125 / 4e-35 VQ motif-containing protein (.1) Potri.006G032300 [exp] 41 / 0.0002 AT3G56880 127 / 1e-35 VQ motif-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016814 [exp] 67 / 2e-13 AT4G39720 52 / 4e-08 VQ motif-containing protein (.1) Lus10024738 [exp] 49 / 1e-06 AT1G35830 92 / 3e-21 VQ motif-containing protein (.1) Lus10006941 [exp] 49 / 1e-06 AT1G35830 93 / 3e-21 VQ motif-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05678 [poplar] [flax] VQ VQ motif
Representative CDS sequence Show only first row Show all	>Potri.003G075800.1 pacid=42786931 polypeptide=Potri.003G075800.1.p locus=Potri.003G075800 ID=Potri.003G075800.1.v4.1 annot-version=v4.1 ATGAGTGACACTATGGCTAGTCAGTCGAGTGATTGGGTGCAACTCTATCAACAGGGCAGCATTCATGGACAGGCAACATCTTCCTTTGTATTCTCGGATG CCACCATTGTTAATGTAACAAGTGGTGCATCTGATAATATCATAAATCCAAACAGCTCATCGATTACATCAAGTACTGGTGATCAGAGGTTGACCCCTCA AGGTTGTGTGTCGAAGCCAGTCACAAGGAGGTCTAGAGCTTCAAAGAAGACGCCAGCAACCCTCATCAATGCCAGCACTGCTAATTTTAGAGCCTTAGTG CAACAATTCACTGGCTGTCCTCCTAGTACCTCAATTTCATTTGGGAGCCACAAGGGCCCGATCAACTTGAATTTTGGACTCGGAAGTGCACAAAACCATA GCTGTGCTACTGCAGAAACGGAGCCTCTTGGCAACAGCTATTATCATAGACGACTATCTCAGATGCAGCAACCGAGGCAAAATGCACAGCAACTGCACCA GGACCAAGGATGCAATGTTTCACTTGATAATCTTCCTAATAGCAATGGTTACTCCTCGGTTTCTAGTGACCTTGGACCACATTTAGAGATGCCAGCTGAT TATGGGCTTTTCAATATGGACGATATTGCTCTGCAAGAGCTTGTTAACGAGTCTTTCTCCGATGAAAACATGAACAATATCGATTGCTTTTAG
AA sequence Show only first row Show all	>Potri.003G075800.1 pacid=42786931 polypeptide=Potri.003G075800.1.p locus=Potri.003G075800 ID=Potri.003G075800.1.v4.1 annot-version=v4.1 MSDTMASQSSDWVQLYQQGSIHGQATSSFVFSDATIVNVTSGASDNIINPNSSSITSSTGDQRLTPQGCVSKPVTRRSRASKKTPATLINASTANFRALV QQFTGCPPSTSISFGSHKGPINLNFGLGSAQNHSCATAETEPLGNSYYHRRLSQMQQPRQNAQQLHQDQGCNVSLDNLPNSNGYSSVSSDLGPHLEMPAD YGLFNMDDIALQELVNESFSDENMNNIDCF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22160			VQ motif-containing protein (....		Potri.003G075800 [exp]	0	1
					Potri.014G059701 [exp]	2.82	0.8938
AT1G19020			unknown protein		Potri.012G075800 [exp]	9.05	0.9037
					Potri.008G212400 [exp]	9.48	0.9040
AT2G45040			Matrixin family protein (.1)		Potri.001G157500 [exp]	12.36	0.9021	Pt-MMP.15
					Potri.019G016104 [exp]	13.85	0.8197
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Potri.019G003500 [exp]	14.69	0.8859
AT1G68765		IDA	INFLORESCENCE DEFICIENT IN ABS...		Potri.010G131500 [exp]	15.36	0.9016
AT2G42360			RING/U-box superfamily protein...		Potri.019G091400 [exp]	16.58	0.8984
AT3G22560			Acyl-CoA N-acyltransferases (N...		Potri.008G154800 [exp]	17.32	0.8557
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.009G032800 [exp]	25.07	0.8661

Compare expression of checked genes

Potri.003G075800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.