Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25200 130 / 8e-38 ATHSP23.6-MITO mitochondrion-localized small heat shock protein 23.6 (.1) AT5G51440 113 / 3e-31 HSP20-like chaperones superfamily protein (.1) AT4G27670 77 / 4e-17 HSP21 heat shock protein 21 (.1) AT1G52560 49 / 6e-07 HSP20-like chaperones superfamily protein (.1.2) AT1G07400 45 / 4e-06 HSP20-like chaperones superfamily protein (.1) AT1G53540 39 / 0.0009 HSP20-like chaperones superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G109200 [exp] 98 / 3e-25 AT4G25200 191 / 2e-61 mitochondrion-localized small heat shock protein 23.6 (.1) Potri.009G021400 [exp] 83 / 3e-19 AT4G25200 108 / 3e-29 mitochondrion-localized small heat shock protein 23.6 (.1) Potri.012G022400 [exp] 73 / 2e-15 AT4G27670 221 / 7e-73 heat shock protein 21 (.1) Potri.006G034600 [exp] 57 / 6e-10 AT5G51440 68 / 2e-14 HSP20-like chaperones superfamily protein (.1) Potri.010G053400 [exp] 53 / 2e-08 AT4G27670 141 / 2e-41 heat shock protein 21 (.1) Potri.003G075900 [exp] 49 / 6e-07 AT4G25200 61 / 4e-11 mitochondrion-localized small heat shock protein 23.6 (.1) Potri.015G005801 [exp] 44 / 2e-05 AT4G27670 0 / 1 heat shock protein 21 (.1) Potri.009G039200 [exp] 42 / 5e-05 AT1G07400 201 / 3e-67 HSP20-like chaperones superfamily protein (.1) Potri.004G187400 [exp] 40 / 0.0003 AT1G07400 193 / 7e-64 HSP20-like chaperones superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031154 [exp] 124 / 2e-35 AT4G25200 224 / 1e-74 mitochondrion-localized small heat shock protein 23.6 (.1) Lus10031730 [exp] 119 / 3e-32 AT4G25200 215 / 3e-69 mitochondrion-localized small heat shock protein 23.6 (.1) Lus10028937 [exp] 86 / 3e-19 AT3G60600 305 / 2e-101 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10006444 [exp] 51 / 1e-07 AT4G27670 135 / 1e-39 heat shock protein 21 (.1) Lus10042408 [exp] 47 / 2e-06 AT4G10250 154 / 1e-47 HSP20-like chaperones superfamily protein (.1) Lus10011385 [exp] 47 / 3e-06 AT4G27670 133 / 9e-39 heat shock protein 21 (.1) Lus10026262 [exp] 45 / 8e-06 AT4G10250 152 / 5e-47 HSP20-like chaperones superfamily protein (.1) Lus10000932 [exp] 43 / 8e-05 AT4G10250 200 / 2e-65 HSP20-like chaperones superfamily protein (.1) Lus10040560 [exp] 42 / 0.0001 AT4G10250 200 / 1e-65 HSP20-like chaperones superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [poplar] [flax] HSP20 PF00011 [poplar] [flax] HSP20 Hsp20/alpha crystallin family
Representative CDS sequence Show only first row Show all	>Potri.003G076000.1 pacid=42786626 polypeptide=Potri.003G076000.1.p locus=Potri.003G076000 ID=Potri.003G076000.1.v4.1 annot-version=v4.1 ATGGCAACATCTGTCGCTCTAAGGAGAGCCACCGCTTCTCCTCTGTTTGCTAAGCTCACCAACCCTGTTCGTTCCGTCTCTGTTTTTCGTTCCTTCAACA CTGATTCTCAGTCTCAGGTCGCCAACACCGGAGGCATTGCCCCAGGTGACTATGGTAGGGTCGAGCTTGATCGCCGCAGTTCCTCTGATCGTAGCCCTGC TCGCCGTGGTGATACTACTCCAAGTTTCTTCTCAGATGCGTTCGATCCACTATTCCCAAAGAGGAGTCTAAGCCAGGTCCTGAACCTAATGGACCAGTTC TTGGACAACCCTTTCCTTCCGGCTGCCTCACGGGGTGCTGGAGCTTCGATTGCAAGGCGAGGTTTTGACGTGAAGGAGGACGAGAATGGTCTTTTTATAT GCATGGACATGCCTGGGCTTAGCAAAGAGGATGTAAAGGTGATCGTGGAGCAGAATACCCTTGTCATCAAAGGCGAAGAATCGAAGGAAGGCGATGGGAG TGGAAGGAGGAGGTACTCTAGCAGACTCGAGTTGCCTTCAAATCTTTACAAGCTTGATGGGATTAAAGGTGAAATGAAGAACGGTGTTTTGAAGTTAATG GTGCCTAAAGTGAAAGAGGAAGAGATGAAGAACGTGCACGAGGTTAAGATTGAGTGA
AA sequence Show only first row Show all	>Potri.003G076000.1 pacid=42786626 polypeptide=Potri.003G076000.1.p locus=Potri.003G076000 ID=Potri.003G076000.1.v4.1 annot-version=v4.1 MATSVALRRATASPLFAKLTNPVRSVSVFRSFNTDSQSQVANTGGIAPGDYGRVELDRRSSSDRSPARRGDTTPSFFSDAFDPLFPKRSLSQVLNLMDQF LDNPFLPAASRGAGASIARRGFDVKEDENGLFICMDMPGLSKEDVKVIVEQNTLVIKGEESKEGDGSGRRRYSSRLELPSNLYKLDGIKGEMKNGVLKLM VPKVKEEEMKNVHEVKIE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25200		ATHSP23.6-MITO	mitochondrion-localized small ...		Potri.003G076000 [exp]	0	1
AT1G52560			HSP20-like chaperones superfam...		Potri.001G192600 [exp]	1.00	0.9995
AT2G29500			HSP20-like chaperones superfam...		Potri.001G254700 [exp]	2.23	0.9932
AT1G53540			HSP20-like chaperones superfam...		Potri.001G238700 [exp]	2.44	0.9977	Pt-HSP17.13
AT1G53540			HSP20-like chaperones superfam...		Potri.001G339150 [exp]	2.44	0.9954
AT2G32120		HSP70T-2	heat-shock protein 70T-2 (.1.2...		Potri.010G088600 [exp]	3.46	0.9951
AT3G07090			PPPDE putative thiol peptidase...		Potri.002G241700 [exp]	3.74	0.9872
AT5G37670		HSP15.7CI	HSP20-like chaperones superfam...		Potri.017G130700 [exp]	5.65	0.9847
AT4G10250		ATHSP22.0	HSP20-like chaperones superfam...		Potri.013G089200 [exp]	6.00	0.9907
AT3G09350		Fes1A	Fes1A (.1.2.3)		Potri.006G088000 [exp]	6.32	0.9804
					Potri.009G034001 [exp]	7.41	0.9786

Compare expression of checked genes

Potri.003G076000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.