Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45140 262 / 1e-88 PVA12 plant VAP homolog 12 (.1) AT3G60600 258 / 8e-87 (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, VAP27-1, VAP27, (AT)VAP, (AT)VAP, (A VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) AT4G00170 220 / 5e-72 Plant VAMP (vesicle-associated membrane protein) family protein (.1) AT2G23830 184 / 3e-59 PapD-like superfamily protein (.1) AT5G47180 169 / 2e-52 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) AT1G51270 173 / 2e-51 structural molecules;transmembrane receptors;structural molecules (.1.2.3.4) AT1G08820 154 / 1e-44 VAP27-2 vamp/synaptobrevin-associated protein 27-2 (.1.2) AT4G21450 58 / 9e-10 PapD-like superfamily protein (.1.2.3) AT4G05060 57 / 2e-09 PapD-like superfamily protein (.1) AT5G54110 54 / 1e-08 ATMAMI membrane-associated mannitol-induced (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G152000 [exp] 370 / 2e-131 AT2G45140 296 / 6e-102 plant VAP homolog 12 (.1) Potri.014G060900 [exp] 317 / 4e-110 AT2G45140 328 / 9e-115 plant VAP homolog 12 (.1) Potri.002G144000 [exp] 305 / 1e-105 AT3G60600 298 / 1e-102 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Potri.002G144800 [exp] 268 / 5e-91 AT4G00170 313 / 5e-109 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Potri.013G031400 [exp] 155 / 2e-45 AT1G08820 273 / 5e-89 vamp/synaptobrevin-associated protein 27-2 (.1.2) Potri.005G044900 [exp] 151 / 1e-43 AT1G08820 261 / 4e-84 vamp/synaptobrevin-associated protein 27-2 (.1.2) Potri.003G082500 [exp] 138 / 3e-40 AT5G47180 281 / 1e-96 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) Potri.001G152100 [exp] 137 / 1e-39 AT5G47180 229 / 4e-76 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) Potri.010G031601 [exp] 129 / 1e-35 AT2G45140 112 / 4e-29 plant VAP homolog 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007463 [exp] 291 / 2e-99 AT3G60600 306 / 4e-105 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10008512 [exp] 281 / 8e-96 AT2G45140 296 / 7e-102 plant VAP homolog 12 (.1) Lus10028937 [exp] 288 / 2e-95 AT3G60600 305 / 2e-101 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10015885 [exp] 277 / 2e-94 AT2G45140 307 / 2e-106 plant VAP homolog 12 (.1) Lus10009279 [exp] 301 / 8e-94 AT4G00060 1034 / 0.0 maternal effect embryo arrest 44, Nucleotidyltransferase family protein (.1) Lus10010360 [exp] 262 / 1e-88 AT4G00170 311 / 5e-108 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Lus10036495 [exp] 259 / 2e-87 AT4G00170 316 / 4e-110 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Lus10000591 [exp] 147 / 1e-43 AT5G47180 277 / 5e-95 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) Lus10033837 [exp] 149 / 5e-42 AT1G08820 256 / 2e-80 vamp/synaptobrevin-associated protein 27-2 (.1.2) Lus10000032 [exp] 110 / 8e-31 AT2G45140 148 / 7e-46 plant VAP homolog 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0556 [poplar] [flax] PapD-like PF00635 [poplar] [flax] Motile_Sperm MSP (Major sperm protein) domain
Representative CDS sequence Show only first row Show all	>Potri.003G076100.1 pacid=42787463 polypeptide=Potri.003G076100.1.p locus=Potri.003G076100 ID=Potri.003G076100.1.v4.1 annot-version=v4.1 ATGAGCACGGGAGAGCTCCTCGGCATCGAACCTCTTGAGCTCAAATTTCCCTTTGAATTGAAGAAGCAGATCTCTTGTTCTCTTCAACTCTCCAATAAAA CTGATAATTATGTCGCTTTCAAGGTCAAAACAACAAATCCCAAGAAGTACTGTGTCCGACCAAATGCTGGGATTGTGTTGCCTCGCTCCACCTGTGATGT TATTGTTACGATGCAAGCACAAAAGGAAGCTCCTACTGACATGCAATGCAAGGACAAGTTCTTGCTTCAAAGTGTAAAAACAAATGACGGTGTCACTGCA AAGGATATTAATGCAGAAATGTTCAGTAAGGAGGCAGGGCATCATGTCGAGGAGTGCAAATTGAGAGTGCTTTATGTTTCTCCCCCTCAACCACCTTCTC CTGTTCAAGAAGGGTCTGAGGAAGGGTCATCCCCCAGGGGTTCTGTGTCGGACAATGGGAATGTTACTGGCACTGATTTATCTACTGCAACAAGGGCATT TGTTGAGCGGCTTGAACCTCAAGAAAAATCTTTGGAGGCAAGAGCCCTTATTTCAAAGCTGACTGATGAGAAGAATAACGCAATTCAACAAAATAACAAG CTGCGTCAAGAATTGGAACTCCTGAGACACCAAGGCAACAAAAACCGTGGTGGTGTATCGATAATGTTCGTAATCTTTGTTGGCTTGCTTGGCATATTTT TGGGGTATCTCGTGAAGAAGACTTAA
AA sequence Show only first row Show all	>Potri.003G076100.1 pacid=42787463 polypeptide=Potri.003G076100.1.p locus=Potri.003G076100 ID=Potri.003G076100.1.v4.1 annot-version=v4.1 MSTGELLGIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNAGIVLPRSTCDVIVTMQAQKEAPTDMQCKDKFLLQSVKTNDGVTA KDINAEMFSKEAGHHVEECKLRVLYVSPPQPPSPVQEGSEEGSSPRGSVSDNGNVTGTDLSTATRAFVERLEPQEKSLEARALISKLTDEKNNAIQQNNK LRQELELLRHQGNKNRGGVSIMFVIFVGLLGIFLGYLVKKT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Potri.003G076100 [exp]	0	1
AT2G04410			RPM1-interacting protein 4 (RI...		Potri.015G089201 [exp]	4.89	0.6823
AT1G64980			Nucleotide-diphospho-sugar tra...		Potri.019G042500 [exp]	18.52	0.6397
AT5G16450			Ribonuclease E inhibitor RraA/...		Potri.019G053800 [exp]	21.33	0.6423
AT1G27330			Ribosome associated membrane p...		Potri.001G057300 [exp]	24.37	0.6422
AT2G32580			Protein of unknown function (D...		Potri.002G227100 [exp]	26.94	0.5939
AT4G33625			unknown protein		Potri.017G043200 [exp]	32.98	0.6186
AT3G13320		ATCAX2, CAX2	cation exchanger 2 (.1)		Potri.011G166900 [exp]	37.45	0.5742
					Potri.009G086900 [exp]	38.34	0.6230
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Potri.001G471500 [exp]	42.24	0.5790
AT5G11730			Core-2/I-branching beta-1,6-N-...		Potri.006G233400 [exp]	66.99	0.5708

Compare expression of checked genes

Potri.003G076100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.