Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16570 877 / 0 ATPRMT7 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 7, protein arginine methyltransferase 7 (.1) AT5G49020 72 / 9e-13 ATPRMT4A ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) AT3G06930 68 / 1e-11 ATPRMT4B ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4B, protein arginine methyltransferase 4B (.1.2) AT2G19670 67 / 1e-11 ATPRMT1A ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1A, protein arginine methyltransferase 1A (.1) AT4G29510 66 / 4e-11 ATPRMT1B, ATPRMT11 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) AT3G12270 61 / 2e-09 ATPRMT3 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) AT3G20020 57 / 3e-08 ATPRMT6 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) AT1G04870 45 / 0.0001 PRMT10, ATPRMT10 protein arginine methyltransferase 10 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G149400 [exp] 65 / 7e-11 AT4G29510 597 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Potri.018G067200 [exp] 64 / 1e-10 AT4G29510 597 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Potri.008G222700 [exp] 61 / 3e-09 AT5G49020 762 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Potri.010G014600 [exp] 56 / 8e-08 AT5G49020 764 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Potri.007G000300 [exp] 52 / 1e-06 AT3G20020 582 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Potri.001G030200 [exp] 50 / 7e-06 AT3G12270 674 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004715 [exp] 916 / 0 AT4G16570 741 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 7, protein arginine methyltransferase 7 (.1) Lus10008510 [exp] 592 / 0 AT4G16570 503 / 3e-169 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 7, protein arginine methyltransferase 7 (.1) Lus10040546 [exp] 70 / 2e-12 AT4G29510 617 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Lus10000982 [exp] 70 / 3e-12 AT4G29510 619 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Lus10003223 [exp] 64 / 7e-12 ND 39 / 8e-04 Lus10034172 [exp] 61 / 2e-09 AT5G49020 743 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Lus10043412 [exp] 61 / 3e-09 AT5G49020 770 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Lus10008577 [exp] 58 / 2e-08 AT4G29510 553 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Lus10010162 [exp] 52 / 1e-06 AT3G20020 614 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Lus10017367 [exp] 52 / 2e-06 AT3G20020 636 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF05185 [poplar] [flax] PRMT5 PRMT5 arginine-N-methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.003G076500.1 pacid=42787419 polypeptide=Potri.003G076500.1.p locus=Potri.003G076500 ID=Potri.003G076500.1.v4.1 annot-version=v4.1 ATGATTCCTCTGCTTTCCAAAACCCTAACAATCCCCTCTCTCCCTCTACTTCGCTTGACTCTCACTCCTCACTCACTACTCACCCGCTTCACTTCCACTC CAACTCCAACACAAACCCGATCCATGAGCTCCGACTCGACTCAGCGCGTCTTCCAGCTCAAACTCGACCCGCTCACTGGTAACTCTGAATGGGTCATCAT CGAAGACGGAAACAAAGAAGAAGAAGAAACTTTTAAGAGTTCCAGCCATGCACTTCTAGCCACGACCTCGTATTTGGACATGCTCAATGACGATACTAGA AACAGAGCATTCCGTGAAGCCATTGACAAGACCATAACCAAACCTTGCCACGTCTTAGACATCGGGGCTGGGACAGGGCTGCTGTCAATGATGGCAGCAA GAGCAATGGGGACATGCGATGATAACAAGAAGGGGATGGTAACAGCGTGTGAGTCATACCTTCCTATGGTGAAATTAATGAGAAAAGTATTGAATTTAAA TGGCATGGGAAAGAATGTTAAGATTTTTAACAAACGCTCCGATGAACTCCAAGTTGATATCGATATTCCTTCACGAGCAGATGTTCTTGTTAGTGAGATA CTAGACTCAGAGTTATTGGGTGAAGGGTTGATACCGACTCTACAGCATGCACATGACATGCTGCTGGTGGACAATCCACTGACTGTGCCGTATCGAGCTA CAACTTATGGCCAGTTGGTTGAAAGCACGTTCCTGTGGAAGCTGCATGATCTATCTAATAATGAGGAAGAAGCCTCAGACGGCATTCGTCTTGTTCCAGC TGGCCTGGACACAATTTTACATGTCAAAGCAAAACAACATCCCATGCATTGTGATGCAATATCAACAGAGATAAATCTGCTGTCAGAACCCTTCAAAATT TTTGAGTTTGACTTTTGGAAACGGCCAGACAGCCAAGGGGACTCTAAATTGCTCATCAAGGCAACTAATGATGGTAGAATTCATGCTGTAGTATCATGGT GGATTCTTCAGCTTGATTCTGAAGGGACAATCTTTTATTCCACTGCTCCTAGATGGATAACTTCACCAATAGCCACACATACTGGAAATTGGTGTGACCA CTGGAAACAGTGTGTGTGGTTCATTCCAGGGGAAGGTATACCCATATCCAAGGGTGAAGAGGTTCATTTACATGCTGTTCATTCTGATATGAGTGTCTCA TATAATCTTGCAACCCAAGCCACTGAGATTAGGGAATGTGATTCCATTGCTGGAGATTCTCACCTCACATTGTCTCCTGAAAGAATTGCAATCTATGGAG ACAGGAAATGGAGGTCTTGCATGTTAACAGCTTTGAACAATTTGTTGCAGGCAAGAGTTCACCCACTATGTGTTGTTGCGGATGATAGTGTTTTCTTATC ACTTCTTGTAGCACATCTCTCAAAAACTTCAAATGTGATAGCTCTGTTTCCTGGGTTGCGAGAGAGGGGTGTGCAGTATTTGAAGGCAGTTGCTGATGCT AATGGCATCACAGCAGATCGTATAGAAGTTTTTCAAAAGAAGAAATACTTGACTCTGAATGATACTAAGCAGAAGAAGGTTGATCTATTGATTGGAGAAC CATACTATTATGGAAACGATGGGATGCTTCCATGGCAAAACTTTCGGTTTTGGAAGGAACGGACTATGCTTGACTCTGTCCTTGCTGAAGATGTGTTAGT AATGCCCTGTAAAGCAATGCTGAAGGCTTGTGCGATGTCCCTTCCAGATCTTTGGAAAAGTCATCGCTGCTTAAGCAAGATAGAAGACTTTGACCATTCA ATTGTAAATAACACCTTAGGAGCCTGTGGTGACTTACCCGCACCACTAGAGGGTCCACTTCTGCCTTTCTTTATATGGCAGTGTGGGGAGACTAAGGAAC TTAGTGAGACATTTACTATCATGGAATTTGATTTCTCAAAATCTATTGGTCCATGCTATGGAAAAGCCCAGGTTGAATTTACTGAGCAAGGGATGTGCCA TGGATTTGTGCTTTGGATTGATTGGGTGATGGATGCGAAGAATTCTGTTGTGCTAACTACAGGGCCAGATGAGAGATATTGGAAGCAAGGAGTGAAGCTT CTGTCACAGCCTGTGGCAGTTGGAGGTCGTGGATCGAGCACGGGTAACTGTTGTTCTACACTAATAGAAGCATCCTTTGATCCATCAAGTGGTGAACTCG CTGTAAAACATGTTTGGTCATAA
AA sequence Show only first row Show all	>Potri.003G076500.1 pacid=42787419 polypeptide=Potri.003G076500.1.p locus=Potri.003G076500 ID=Potri.003G076500.1.v4.1 annot-version=v4.1 MIPLLSKTLTIPSLPLLRLTLTPHSLLTRFTSTPTPTQTRSMSSDSTQRVFQLKLDPLTGNSEWVIIEDGNKEEEETFKSSSHALLATTSYLDMLNDDTR NRAFREAIDKTITKPCHVLDIGAGTGLLSMMAARAMGTCDDNKKGMVTACESYLPMVKLMRKVLNLNGMGKNVKIFNKRSDELQVDIDIPSRADVLVSEI LDSELLGEGLIPTLQHAHDMLLVDNPLTVPYRATTYGQLVESTFLWKLHDLSNNEEEASDGIRLVPAGLDTILHVKAKQHPMHCDAISTEINLLSEPFKI FEFDFWKRPDSQGDSKLLIKATNDGRIHAVVSWWILQLDSEGTIFYSTAPRWITSPIATHTGNWCDHWKQCVWFIPGEGIPISKGEEVHLHAVHSDMSVS YNLATQATEIRECDSIAGDSHLTLSPERIAIYGDRKWRSCMLTALNNLLQARVHPLCVVADDSVFLSLLVAHLSKTSNVIALFPGLRERGVQYLKAVADA NGITADRIEVFQKKKYLTLNDTKQKKVDLLIGEPYYYGNDGMLPWQNFRFWKERTMLDSVLAEDVLVMPCKAMLKACAMSLPDLWKSHRCLSKIEDFDHS IVNNTLGACGDLPAPLEGPLLPFFIWQCGETKELSETFTIMEFDFSKSIGPCYGKAQVEFTEQGMCHGFVLWIDWVMDAKNSVVLTTGPDERYWKQGVKL LSQPVAVGGRGSSTGNCCSTLIEASFDPSSGELAVKHVWS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16570		ATPRMT7	ARABIDOPSIS THALIANA PROTEIN A...		Potri.003G076500 [exp]	0	1
AT1G78930			Mitochondrial transcription te...		Potri.007G001800 [exp]	2.64	0.9324
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Potri.009G103700 [exp]	3.46	0.9157
AT5G16620		PDE120, TIC40, ...	pigment defective embryo 120, ...		Potri.017G129800 [exp]	5.65	0.9266
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Potri.001G072800 [exp]	5.74	0.9177	Pt-TOC75.2
AT1G30680			toprim domain-containing prote...		Potri.001G461300 [exp]	6.63	0.8994
AT3G25430			Polynucleotidyl transferase, r...		Potri.014G177400 [exp]	10.09	0.8912
AT4G10650			P-loop containing nucleoside t...		Potri.012G083100 [exp]	12.00	0.8807
AT4G20010		PTAC9, OSB2	ORGANELLAR SINGLE-STRANDED DNA...		Potri.001G394200 [exp]	13.41	0.9075
AT3G23710		AtTic22-III	translocon at the inner envelo...		Potri.002G236000 [exp]	13.49	0.8971
AT1G50910			unknown protein		Potri.011G136400 [exp]	13.85	0.8823

Compare expression of checked genes

Potri.003G076500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.